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[179707_at]

Description ZC190.5 /REP_DB=WormBase Gene ID /WP=CE18428 /TR=O76700 /GB=AAC26964.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 144
1 2 3 4 range
A 33.9
(-1.1)
A 		2.4
(-3)
A 		2.4
(-3)
A 		103.6
(3)
P 		101
B 13.1
(-2)
A 		3.6
(-3)
A 		5.6
(-2.8)
A 		58.7
(3)
A 		55
C 5
(-3)
A 		5.5
(-3)
A 		7.1
(-2.9)
A 		145.9
(3)
P 		141
avr 17.3
(-2.2) 		3.8
(-3) 		5
(-2.9) 		102.7
(3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 23
(-0.6)
A 		4.7
(-3)
A 		48.7
(2.8)
A 		4.4
(-3)
A 		50.3
(3)
A 		15.8
(-1.5)
A 		46
B 9.8
(-1.4)
A 		25.7
(1.5)
A 		34
(3)
A 		1.3
(-3)
A 		2.3
(-2.8)
A 		22.7
(0.9)
A 		33
C 4.7
(-2.4)
A 		36
(3)
A 		2.3
(-2.8)
A 		7.5
(-1.9)
A 		1.1
(-3)
A 		8.5
(-1.7)
A 		35
avr 12.5
(-1) 		22.1
(1.4) 		28.3
(3) 		4.4
(-3) 		17.9
(0.4) 		15.7
(-0.2) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 12.3
(1.8)
A 		0.5
(-3)
A 		0.6
(-3)
A 		15.2
(3)
P 		15
B 4.2
(-1.3)
A 		0.9
(-3)
A 		1.3
(-2.8)
A 		12.5
(3)
A 		12
C 1.7
(-3)
A 		1.6
(-3)
A 		2.5
(-2.8)
A 		24.6
(3)
P 		23
avr 6.1
(-1.1) 		1
(-3) 		1.5
(-2.8) 		17.4
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 4.2
(-1.7)
A 		1.7
(-2.7)
A 		10.6
(1)
A 		1.1
(-3)
A 		15.2
(3)
A 		3.9
(-1.8)
A 		14
B 3.4
(-0.8)
A 		8.6
(3)
A 		8.2
(2.7)
A 		0.3
(-3)
A 		0.9
(-2.6)
A 		8.5
(2.9)
A 		8
C 1.7
(-2.3)
A 		11
(3)
A 		0.6
(-2.9)
A 		1.5
(-2.4)
A 		0.4
(-3)
A 		2.8
(-1.6)
A 		11
avr 3.1
(-0.9) 		7.1
(3) 		6.5
(2.4) 		1
(-3) 		5.5
(1.4) 		5.1
(1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179707_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12220
Sequence Type Exemplar sequence
Representative Public ID ZC190.5 NCBI
Target Description ZC190.5 /REP_DB=WormBase Gene ID /WP=CE18428 /TR=O76700 /GB=AAC26964.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072833(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072833 NCBI Caenorhabditis elegans ZC190.5 (ZC190.5) mRNA, complete cds. 11/11 None
GENEFINDER00000000640 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8673955:8676094:-1 11/11 None
ZC190.5 ENSEMBL cdna:known chromosome:CEL140:V:8673955:8676133:-1 gene:ZC190.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000631 3/11 Cross Hyb Matching Probes None
SNAP00000000632 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8673955-8676134(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC190.5
Entrez Gene 191095 Entrez gene
SwissProt O76700 EMBL-EBI
WormBase CE18428 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26964 Hypothetical protein ZC190.5 [Caenorhabditis elegans] ref|NP_505234.1| ZC190.5 [Caenorhabditis elegans] 1.0E-177
blast AAC26964 Hypothetical protein ZC190.5 [Caenorhabditis elegans] ref|NP_505234.1| ZC190.5 [Caenorhabditis elegans] 1.0E-166
blast CAE58338 Hypothetical protein CBG01452 [Caenorhabditis briggsae] 5.0E-87
blast CAE58337 Hypothetical protein CBG01451 [Caenorhabditis briggsae] 4.0E-28
blast CAE58337 Hypothetical protein CBG01451 [Caenorhabditis briggsae] 3.0E-25
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505234.1 6 7-29,34-56,110-132,137-159,171-193,203-225
ZC190.5 6 7-29,34-56,110-132,137-159,171-193,203-225
GENEFINDER00000000640 7 10-32,44-66,86-105,117-139,144-166,178-200,210-232
Sequence
Target Sequence 
>C. ELEGANS:179707_AT
atccagattttcatgctagtaccacatttgtagttttaatctatgtttcaatagtttctg
cggtatttttagcattaagtttcagtgttggagtacatatttacgggcagctgattttag
caacttcacttatgagtctttctgactatctcggactaattatgtctgaagtttacgcat
ggacctctacactgttgcctgcagtcgcaggtgcatccatatttaaagtattatctatga
ttcctatttggatatggcttctttcaaacctgacagactgggaatacggtcttgcaaact
ttctatacaataatattctgaacgcttacgtttgtcttttcccatgggtattgatttcga
gaaatcgaagtcttaaaaaacagattcttgcgaaaaaacgaatatctccagacggagata
caatgaaatcagtaagaacaaaaaagcacatgattcggtacaaaatgtcatggaacccgg
gaacagatccacgggtgactccaatgggtgaaaagcagattgagcaaatgaccggactcg
ctgagagcacggcactacgcgcatgggcggtgcagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCAGATTTTCATGCTAGTACCAC 643 39 332 Antisense
GCAACTTCACTTATGAGTCTTTCTG 626 319 451 Antisense
TCTTTCTGACTATCTCGGACTAATT 334 615 468 Antisense
GAAGTTTACGCATGGACCTCTACAC 183 337 499 Antisense
GTTGCCTGCAGTCGCAGGTGCATCC 321 439 525 Antisense
GGATATGGCTTCTTTCAAACCTGAC 277 511 581 Antisense
GAATACGGTCTTGCAAACTTTCTAT 144 325 613 Antisense
CGTTTGTCTTTTCCCATGGGTATTG 229 247 660 Antisense
GGAACAGATCCACGGGTGACTCCAA 303 529 811 Antisense
TGACCGGACTCGCTGAGAGCACGGC 141 571 860 Antisense
CACTACGCGCATGGGCGGTGCAGAA 420 191 884 Antisense
Sequence Source Affymetrix Proprietary Database