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[179706_at]

Description F23C8.1 /REP_DB=WormBase Gene ID /WP=CE20711 /TR=Q9TXH7 /GB=AAD03138.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 46      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 54.9
(3)
A 		8.5
(-2.5)
A 		4.5
(-3)
A 		5.8
(-2.8)
A 		50
B 6.9
(1.4)
A 		8.4
(3)
A 		5.8
(0.2)
A 		2.9
(-3)
A 		6
C 23.2
(3)
A 		12.5
(-0.5)
A 		5.6
(-2.8)
A 		5
(-3)
A 		18
avr 28.3
(3) 		9.8
(-1.7) 		5.3
(-2.8) 		4.6
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 16
(3)
A 		7.9
(-1.3)
A 		13.1
(1.5)
A 		4.7
(-3)
A 		4.9
(-2.9)
A 		5.8
(-2.4)
A 		11
B 8.7
(-1.7)
A 		1.6
(-3)
A 		35.4
(3)
A 		8.1
(-1.8)
A 		6.1
(-2.2)
A 		19.7
(0.2)
A 		34
C 39.1
(3)
A 		6.4
(-2.4)
A 		3
(-3)
A 		4.1
(-2.8)
A 		3.2
(-3)
A 		5.9
(-2.5)
A 		36
avr 21.3
(3) 		5.3
(-2.8) 		17.2
(1.5) 		5.6
(-2.7) 		4.7
(-3) 		10.5
(-0.9) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 20
(3)
A 		1.8
(-2.7)
A 		1.2
(-2.9)
A 		0.8
(-3)
A 		19
B 2.2
(3)
A 		2.1
(2.6)
A 		1.3
(-0.4)
A 		0.6
(-3)
A 		2
C 7.7
(3)
A 		3.6
(-0.6)
A 		1.9
(-2)
A 		0.8
(-3)
A 		7
avr 10
(3) 		2.5
(-1.8) 		1.5
(-2.5) 		0.7
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 3
(3)
A 		2.8
(2.3)
A 		2.9
(2.7)
A 		1.2
(-3)
A 		1.5
(-2)
A 		1.4
(-2.3)
A 		2
B 3
(-1.1)
A 		0.5
(-3)
A 		8.6
(3)
A 		2.1
(-1.8)
A 		2.5
(-1.5)
A 		7.3
(2)
A 		8
C 14.5
(3)
A 		2
(-2.5)
A 		0.8
(-3)
A 		0.8
(-3)
A 		1
(-2.9)
A 		2
(-2.5)
A 		14
avr 6.8
(3) 		1.8
(-2.6) 		4.1
(-0) 		1.4
(-3) 		1.7
(-2.7) 		3.6
(-0.6) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179706_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.247
Sequence Type Exemplar sequence
Representative Public ID F23C8.1 NCBI
Target Description F23C8.1 /REP_DB=WormBase Gene ID /WP=CE20711 /TR=Q9TXH7 /GB=AAD03138.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058579(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058579 NCBI Caenorhabditis elegans F23C8.1 (F23C8.1) mRNA, complete cds. 11/11 None
SNAP00000018142 ENSEMBL cdna:SNAP chromosome:CEL140:I:2446741:2448368:1 11/11 None
GENEFINDER00000018153 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2446741:2448368:1 11/11 None
F23C8.1 ENSEMBL cdna:known chromosome:CEL140:I:2446764:2448346:1 gene:F23C8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2446740-2448368(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F23C8.1
Entrez Gene 184890 Entrez gene
SwissProt Q9TXH7 EMBL-EBI
WormBase CE34298 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD03138 Hypothetical protein F23C8.1 [Caenorhabditis elegans] ref|NP_490980.2| F23C8.1 [Caenorhabditis elegans] 2.0E-61
blast AAD03138 Hypothetical protein F23C8.1 [Caenorhabditis elegans] ref|NP_490980.2| F23C8.1 [Caenorhabditis elegans] 3.0E-57
blast AAD03138 Hypothetical protein F23C8.1 [Caenorhabditis elegans] ref|NP_490980.2| F23C8.1 [Caenorhabditis elegans] 4.0E-55
blast CAE61346 Hypothetical protein CBG05186 [Caenorhabditis briggsae] 2.0E-10
blast CAE61346 Hypothetical protein CBG05186 [Caenorhabditis briggsae] 5.0E-9
Sequence
Target Sequence 
>C. ELEGANS:179706_AT
gaatccgttcttcgtataagcgatcttcatgataccaactacggagtgaactctgaagga
gtgcttcagattgttgattttcaagcggtaccggaaaagaaattgaaatattatatcagc
aaaactgatccgctcgacgctgacttttcggactcggaaacgtctacatcatcaggtcgt
acatcgtcttcttccgattcagagacatgcaattccgtcaaaactgatcgtcgcagagct
ctagaatcctttgtgcaaatttatggaaatacatttcgcggaattgtgaaggagtcagcg
gatgagatccgaggcttcgccaatcttcttcaagataa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCCGTTCTTCGTATAAGCGATC 83 329 604 Antisense
GCGATCTTCATGATACCAACTACGG 208 289 623 Antisense
TCAGCAAAACTGATCCGCTCGACGC 639 623 719 Antisense
CGCTGACTTTTCGGACTCGGAAACG 134 251 741 Antisense
TCATCAGGTCGTACATCGTCTTCTT 245 621 772 Antisense
GATTCAGAGACATGCAATTCCGTCA 247 431 799 Antisense
AATTCCGTCAAAACTGATCGTCGCA 480 177 814 Antisense
GATCGTCGCAGAGCTCTAGAATCCT 464 417 829 Antisense
GAGCTCTAGAATCCTTTGTGCAAAT 441 387 839 Antisense
GATGAGATCCGAGGCTTCGCCAATC 475 411 904 Antisense
GCTTCGCCAATCTTCTTCAAGATAA 91 307 917 Antisense
Sequence Source Affymetrix Proprietary Database