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[179705_at]

Description Y62H9A.7 /REP_DB=WormBase Gene ID /WP=CE19243 /TR=Q9XWT2 /GB=CAA21563.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 41      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 37.7
(-3)
A 		99.3
(0.8)
A 		110.9
(1.5)
A 		134.8
(3)
A 		97
B 59.8
(-0.9)
A 		88.9
(0.9)
A 		122.4
(3)
A 		26.7
(-3)
A 		96
C 65.3
(-3)
A 		138.9
(3)
A 		95.9
(-0.5)
A 		92.4
(-0.8)
A 		74
avr 54.3
(-3) 		109
(2.9) 		109.7
(3) 		84.6
(0.3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 39.9
(-3)
A 		57
(-1.4)
A 		80.8
(0.9)
A 		83.5
(1.2)
A 		102.5
(3)
A 		76.1
(0.5)
A 		63
B 53.5
(-0.4)
A 		52.6
(-0.6)
A 		71
(2.2)
A 		76.3
(3)
A 		49.5
(-1)
A 		36.3
(-3)
A 		40
C 69.4
(2.4)
A 		24.2
(-1.6)
A 		76
(3)
A 		7.7
(-3)
A 		61.4
(1.7)
A 		50.2
(0.7)
A 		68
avr 54.3
(-1.1) 		44.6
(-3) 		75.9
(3) 		55.8
(-0.9) 		71.1
(2.1) 		54.2
(-1.2) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 13.7
(-3)
A 		21.6
(0.1)
A 		29
(3)
A 		19.7
(-0.6)
A 		15
B 19.1
(0.5)
A 		22
(1.3)
A 		28.4
(3)
A 		5.7
(-3)
A 		23
C 21.6
(-1.5)
A 		39.9
(3)
A 		33.4
(1.4)
A 		15.6
(-3)
A 		24
avr 18.1
(-1.4) 		27.8
(2.1) 		30.3
(3) 		13.7
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 7.4
(-3)
A 		20.3
(0.3)
A 		17.6
(-0.4)
A 		21.2
(0.5)
A 		30.9
(3)
A 		18.5
(-0.2)
A 		24
B 18.6
(1.6)
A 		17.5
(0.6)
A 		17.2
(0.3)
A 		20.2
(3)
A 		20.1
(2.9)
A 		13.5
(-3)
A 		7
C 25.7
(3)
A 		7.4
(-1.5)
A 		19.3
(1.4)
A 		1.5
(-3)
A 		19.9
(1.6)
A 		16.8
(0.8)
A 		24
avr 17.2
(-1.1) 		15.1
(-2.5) 		18
(-0.6) 		14.3
(-3) 		23.6
(3) 		16.3
(-1.7) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179705_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16306
Sequence Type Exemplar sequence
Representative Public ID Y62H9A.7 NCBI
Target Description Y62H9A.7 /REP_DB=WormBase Gene ID /WP=CE19243 /TR=Q9XWT2 /GB=CAA21563.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077587(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077587 NCBI Caenorhabditis elegans Y62H9A.7 (Y62H9A.7) mRNA, complete cds. 11/11 None
GENEFINDER00000025473 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11884251:11886359:-1 11/11 None
Y62H9A.7 ENSEMBL cdna:known chromosome:CEL140:X:11884251:11886359:-1 gene:Y62H9A.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025459 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11884250-11886359(-) 91.74 100.0
Public Domain and Genome References
Gene Title
Ensembl Y62H9A.7
Entrez Gene 190462 Entrez gene
SwissProt Q9XWT2 EMBL-EBI
WormBase CE19243 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21563 Hypothetical protein Y62H9A.7 [Caenorhabditis elegans] ref|NP_509988.1| Y62H9A.7 [Caenorhabditis elegans] 1.0E-144
Sequence
Target Sequence 
>C. ELEGANS:179705_AT
ttactgatgaccgcaattacctcttggcaatgcaagaaacaatgcaaggatatttgcaat
cgtcaggacaagttcactctgacattcaccacaagagccgtctccaccaagatcttgata
caagaagaagccggccgtggatgtcatctacagccatcaatcatggtcaacctgaagaga
acagtcgtttcgaaatggatgatgaaactatttgtctctttgcagaagctctacgacgtt
gccaaagttttcatgagacaccagcttttgcaaatttgtaccttgccggagaattgactg
ccaagaaagtcgctatgatgatgtatcacaacaaagtattccatcattgtactactgtgg
accaatgcggagctttagtcgcgctccttagagaacatcatgaacatgtaccaggagatt
gtctcacagaggttttgaacattttggaacagtacgaaaaacaacggaataacttgagat
caacaccgttgccaacttgccaccatgtcgatacatggtacaacttggatgaaatgaatg
tgactccaatctgctgctgcgacgctgatcaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTACTGATGACCGCAATTACCTCTT 608 681 131 Antisense
GGACAAGTTCACTCTGACATTCACC 111 527 196 Antisense
GCCGTCTCCACCAAGATCTTGATAC 187 285 227 Antisense
CCGGCCGTGGATGTCATCTACAGCC 31 265 261 Antisense
GCAGAAGCTCTACGACGTTGCCAAA 577 311 352 Antisense
GTTTTCATGAGACACCAGCTTTTGC 565 447 377 Antisense
GTACCTTGCCGGAGAATTGACTGCC 161 459 408 Antisense
ATGCGGAGCTTTAGTCGCGCTCCTT 231 43 495 Antisense
GAGATCAACACCGTTGCCAACTTGC 706 395 606 Antisense
ATGAATGTGACTCCAATCTGCTGCT 22 45 664 Antisense
TCTGCTGCTGCGACGCTGATCAAAA 599 609 680 Antisense
Sequence Source Affymetrix Proprietary Database