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[179704_at]

Description C16D9.4 /REP_DB=WormBase Gene ID /WP=CE06840 /TR=Q22898 /GB=AAB18284.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 66      4grp_highest_8_8 > 13      4grp_high_8_8 > 22      6grp_highest_nonorm > 92      6grp_total > 67      4grp_total > 16      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 593
1 2 3 4 range
A 168.1
(-3)
P 		369.6
(-0.3)
P 		401.4
(0.1)
P 		616.4
(3)
P 		448
B 158.3
(-3)
P 		338.3
(-1.2)
P 		390.1
(-0.7)
P 		751.1
(3)
P 		593
C 188.2
(-3)
P 		300.2
(-1.6)
P 		426.4
(0.1)
P 		653.9
(3)
P 		466
avr 171.5
(-3) 		336
(-1) 		406
(-0.2) 		673.8
(3) 		502

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 360
1 2 3 4 5 6 range
A 228.4
(-1.4)
P 		209.7
(-1.9)
P 		221.8
(-1.6)
P 		222.4
(-1.6)
P 		171.6
(-3)
P 		384.6
(3)
P 		213
B 207.8
(-2.6)
P 		185.9
(-3)
P 		239.6
(-1.9)
P 		210.3
(-2.5)
P 		208.6
(-2.5)
P 		486.3
(3)
P 		300
C 194.1
(-2.4)
P 		178
(-2.7)
P 		161.8
(-2.9)
P 		191.7
(-2.4)
P 		158
(-3)
P 		517.9
(3)
P 		360
avr 210.1
(-2.4) 		191.2
(-2.8) 		207.7
(-2.4) 		208.1
(-2.4) 		179.4
(-3) 		462.9
(3) 		284
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 61.2
(-3)
P 		80.2
(-0.4)
P 		104.9
(3)
P 		90.2
(1)
P 		44
B 50.5
(-3)
P 		83.6
(-1.2)
P 		90.4
(-0.8)
P 		160.1
(3)
P 		110
C 62.3
(-3)
P 		86.3
(-1.3)
P 		148.6
(3)
P 		110.3
(0.3)
P 		86
avr 58
(-3) 		83.4
(-0.5) 		114.6
(2.5) 		120.2
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 42.1
(-3)
P 		74.6
(0.8)
P 		48.3
(-2.3)
P 		56.4
(-1.3)
P 		51.8
(-1.9)
P 		93.6
(3)
P 		52
B 72.3
(-2.2)
P 		61.9
(-2.7)
P 		58.2
(-2.9)
P 		55.7
(-3)
P 		84.7
(-1.6)
P 		181.3
(3)
P 		126
C 71.9
(-1.5)
P 		54.3
(-2.3)
P 		41.2
(-2.9)
P 		38.6
(-3)
P 		51.1
(-2.4)
P 		173.4
(3)
P 		135
avr 62.1
(-2.2) 		63.6
(-2.1) 		49.2
(-3) 		50.2
(-2.9) 		62.5
(-2.2) 		149.4
(3) 		100
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179704_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12205
Sequence Type Exemplar sequence
Representative Public ID C16D9.4 NCBI
Target Description C16D9.4 /REP_DB=WormBase Gene ID /WP=CE06840 /TR=Q22898 /GB=AAB18284.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072723(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072723 NCBI Caenorhabditis elegans C16D9.4 (C16D9.4) mRNA, complete cds. 11/11 None
GENEFINDER00000043388 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8243602:8245477:-1 10/11 None
C16D9.4 ENSEMBL cdna:known chromosome:CEL140:V:8243521:8245591:-1 gene:C16D9.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043376 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8243602-8245592(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16D9.4
Entrez Gene 179206 Entrez gene
SwissProt Q22898 EMBL-EBI
WormBase CE06840 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB18284 Hypothetical protein C16D9.4 [Caenorhabditis elegans] ref|NP_505124.1| C16D9.4 [Caenorhabditis elegans] 0.0
blast AAB18283 Hypothetical protein C16D9.5 [Caenorhabditis elegans] ref|NP_505125.2| C16D9.5 [Caenorhabditis elegans] 1.0E-135
blast AAB18283 Hypothetical protein C16D9.5 [Caenorhabditis elegans] ref|NP_505125.2| C16D9.5 [Caenorhabditis elegans] 1.0E-129
blast NP_494329 F22E5.1 [Caenorhabditis elegans] gb|AAB66167.1| Hypothetical protein F22E5.1 [Caenorhabditis elegans] 1.0E-122
blast NP_494329 F22E5.1 [Caenorhabditis elegans] gb|AAB66167.1| Hypothetical protein F22E5.1 [Caenorhabditis elegans] 1.0E-117
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505124.1 2 10-27,47-64
C16D9.4 2 10-27,47-64
GENEFINDER00000043388 1 9-26
Sequence
Target Sequence 
>C. ELEGANS:179704_AT
gaagtccgtgtgtttgacactagtggatatccagattatacaaataattggatggaatat
cgatttaagccacttattgtggcagaagttatgaaggagtatgaatacatttggtggatg
gatgcgcatatttcagttaaaactgctgggcttattgaagcattttcaaaagaattatct
gaaaattctaagaaaactgatactagagtacaaatccctatatactttttcattcattca
agtcacagcaactttgccactttatttaaatcgttattaacgtttttcccaacaaattcc
atatcacttttgaaagatcctaatcgtggagcccagctgggtgcaaacactatcttcttt
gcaagaaccaaatacactgttgagacagtaaaatggtgggtcctgtgtgcccttgaccag
aagtgtatgaatccaccaggtgctcaagtttattgtcgttttccagataatgataggaat
actcaatttgctaattgctatagatttgaccaatctgtgctcaacctactgatgctgaat
g

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTCCGTGTGTTTGACACTAGTG 702 335 652 Antisense
ATCCCTATATACTTTTTCATTCATT 178 39 865 Antisense
CAGCAACTTTGCCACTTTATTTAAA 144 203 897 Antisense
TTCCCAACAAATTCCATATCACTTT 640 695 937 Antisense
CTAATCGTGGAGCCCAGCTGGGTGC 64 227 971 Antisense
AGCTGGGTGCAAACACTATCTTCTT 543 79 986 Antisense
AAAATGGTGGGTCCTGTGTGCCCTT 494 131 1041 Antisense
ATCCACCAGGTGCTCAAGTTTATTG 338 39 1082 Antisense
TCAAGTTTATTGTCGTTTTCCAGAT 51 633 1095 Antisense
ATTTGACCAATCTGTGCTCAACCTA 89 17 1155 Antisense
GTGCTCAACCTACTGATGCTGAATG 316 479 1168 Antisense
Sequence Source Affymetrix Proprietary Database