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[179703_at]

Description F58G4.3 /REP_DB=WormBase Gene ID /WP=CE07308 /TR=Q20998 /GB=AAG24134.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 37      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 63.6
(3)
A 		36.3
(0.2)
A 		5.8
(-3)
A 		6.2
(-3)
A 		58
B 25.2
(3)
A 		21.9
(0.7)
A 		16.7
(-3)
A 		19.3
(-1.2)
A 		9
C 29.9
(-0.7)
A 		24.7
(-1.5)
A 		14
(-3)
A 		56
(3)
A 		42
avr 39.6
(3) 		27.6
(0.4) 		12.2
(-3) 		27.2
(0.3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 52.8
(3)
A 		6.8
(-3)
A 		25
(-0.6)
A 		44.9
(2)
A 		8.4
(-2.8)
A 		38.3
(1.1)
A 		46
B 30.1
(3)
A 		14.2
(-0.9)
A 		26.6
(2.1)
A 		6.3
(-2.9)
A 		9.4
(-2.1)
A 		5.9
(-3)
A 		24
C 37.9
(3)
A 		6
(-2.3)
A 		18.6
(-0.2)
A 		1.8
(-3)
A 		5
(-2.5)
A 		21.9
(0.3)
A 		36
avr 40.3
(3) 		9
(-2.7) 		23.4
(-0.1) 		17.7
(-1.1) 		7.6
(-3) 		22
(-0.4) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 23.2
(3)
A 		7.9
(-1.1)
A 		1.5
(-2.8)
A 		0.9
(-3)
A 		22
B 8
(3)
A 		5.4
(-0.8)
A 		3.9
(-3)
A 		4.1
(-2.7)
A 		4
C 9.9
(3)
A 		7.1
(-0.4)
A 		4.9
(-3)
A 		9.4
(2.4)
A 		5
avr 13.7
(3) 		6.8
(-1) 		3.4
(-3) 		4.8
(-2.2) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 9.7
(1.9)
A 		2.4
(-3)
A 		5.5
(-0.9)
A 		11.4
(3)
A 		2.5
(-2.9)
A 		9.3
(1.6)
A 		9
B 10.5
(3)
A 		4.7
(-1)
A 		6.5
(0.3)
A 		1.7
(-3)
A 		3.8
(-1.6)
A 		2.2
(-2.7)
A 		9
C 14.1
(3)
A 		1.8
(-2.4)
A 		4.7
(-1.1)
A 		0.4
(-3)
A 		1.6
(-2.5)
A 		7.3
(0)
A 		14
avr 11.4
(3) 		3
(-2.7) 		5.6
(-1) 		4.5
(-1.7) 		2.6
(-3) 		6.3
(-0.5) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179703_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11380
Sequence Type Exemplar sequence
Representative Public ID F58G4.3 NCBI
Target Description F58G4.3 /REP_DB=WormBase Gene ID /WP=CE07308 /TR=Q20998 /GB=AAG24134.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072692(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072692 NCBI Caenorhabditis elegans F58G4.3 (F58G4.3) mRNA, complete cds. 11/11 None
SNAP00000010857 ENSEMBL cdna:SNAP chromosome:CEL140:V:8107364:8108203:1 9/11 None
GENEFINDER00000010862 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8107364:8108203:1 11/11 None
F58G4.3 ENSEMBL cdna:known chromosome:CEL140:V:8107364:8108203:1 gene:F58G4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8107364-8108204(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58G4.3
Entrez Gene 186543 Entrez gene
SwissProt Q20998 EMBL-EBI
WormBase CE07308 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24134 Hypothetical protein F58G4.3 [Caenorhabditis elegans] ref|NP_505093.1| F58G4.3 [Caenorhabditis elegans] 7.0E-84
blast AAG24134 Hypothetical protein F58G4.3 [Caenorhabditis elegans] ref|NP_505093.1| F58G4.3 [Caenorhabditis elegans] 1.0E-61
blast CAB02926 Hypothetical protein F11F1.4 [Caenorhabditis elegans] ref|NP_499764.1| F11F1.4 [Caenorhabditis elegans] 9.0E-23
blast CAB02927 Hypothetical protein F11F1.5 [Caenorhabditis elegans] ref|NP_499765.1| F11F1.5 [Caenorhabditis elegans] 3.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR003677 EMBL-EBI Protein of unknown function, DUF 148 2.3E-35
Pfam IPR003677 EMBL-EBI Protein of unknown function, DUF 148 1.4E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505093.1 1 7-29
F58G4.3 1 7-29
SNAP00000010857 1 7-29
GENEFINDER00000010862 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:179703_AT
tgtacttgatgtagccaacggccttggtaatataatcggagattcggaaggatgcatctg
cggaattattgaaaatcttcttggaggggaccaaaatgcaaccaaaggtcttttgaaagt
tcttgatttgaatttaaacaagttgcaagatgaccttcttggaaatagctctgctcttgt
tggtcttctaaccaatttcattggaaaaatcccagaagaagttcttccggaagttaaatc
tcttcttgcaaaagcaaatgaaatcgagattgatgaactaatttcgaaacttaatgaact
tgttccacaagtgaagattggtaatcttctcaaaaaattgatttccgaagtgtcaaaact
cattaaaaatcttctcaaaaaagttggaaaaattatcaaaaaagtgggagccgtctttga
aaagttgacgaaaattattaaaaacacaaccaaaactattgaggagaaaaatgaggaaat
tcaaaaattgaaagaccaaaacgaaattgaattcaatgttataattttcattgtttctca
aattgatgtagatcttcaagttgaaaatggaggaattgttccaccaatctctgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTACTTGATGTAGCCAACGGCCTT 198 559 132 Antisense
AACGGCCTTGGTAATATAATCGGAG 642 121 148 Antisense
GATTCGGAAGGATGCATCTGCGGAA 279 433 172 Antisense
GGAGGGGACCAAAATGCAACCAAAG 447 499 214 Antisense
GACCTTCTTGGAAATAGCTCTGCTC 575 383 283 Antisense
GAAATAGCTCTGCTCTTGTTGGTCT 254 363 293 Antisense
TCTGCTCTTGTTGGTCTTCTAACCA 332 609 301 Antisense
GTTAAATCTCTTCTTGCAAAAGCAA 471 443 364 Antisense
GATTTCCGAAGTGTCAAAACTCATT 232 423 471 Antisense
AGTGGGAGCCGTCTTTGAAAAGTTG 265 1 534 Antisense
GAGGAATTGTTCCACCAATCTCTGT 433 405 701 Antisense
Sequence Source Affymetrix Proprietary Database