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[179702_at]

Description Y62H9A.1 /REP_DB=WormBase Gene ID /WP=CE19237 /TR=Q9XWT7 /GB=CAA21558.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 08      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 37.2
(-3)
A 		38.6
(-2.9)
A 		38
(-2.9)
A 		101.7
(3)
A 		65
B 27.4
(-3)
A 		28.6
(-2.8)
A 		75.2
(3)
A 		72.9
(2.7)
P 		48
C 43.5
(-2.3)
A 		46.8
(-2.1)
A 		34.2
(-3)
A 		113.9
(3)
P 		80
avr 36
(-3) 		38
(-2.8) 		49.1
(-1.7) 		96.2
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 8.6
(-3)
A 		42.5
(-1.1)
A 		97.2
(2)
P 		115.5
(3)
P 		95.2
(1.9)
A 		48.7
(-0.7)
A 		107
B 10
(-3)
A 		41.1
(-0.1)
A 		73.5
(3)
P 		67.6
(2.4)
M 		70.6
(2.7)
P 		35.1
(-0.6)
P 		64
C 54.5
(-2.3)
A 		49.6
(-3)
P 		80
(1.2)
A 		93.2
(3)
P 		53.3
(-2.5)
A 		58.2
(-1.8)
P 		44
avr 24.4
(-3) 		44.4
(-1.2) 		83.6
(2.2) 		92.1
(3) 		73
(1.3) 		47.3
(-1) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 13.6
(1.8)
A 		8.4
(-3)
A 		9.9
(-1.6)
A 		14.9
(3)
A 		7
B 8.8
(-2)
A 		7.1
(-3)
A 		17.4
(3)
A 		15.5
(1.9)
P 		10
C 14.4
(-0.9)
A 		13.4
(-1.8)
A 		11.9
(-3)
A 		19.2
(3)
P 		7
avr 12.3
(-0.7) 		9.6
(-3) 		13.1
(0) 		16.5
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 1.6
(-3)
A 		15.1
(-0.1)
A 		21.2
(1.2)
P 		29.3
(3)
P 		28.7
(2.9)
A 		11.8
(-0.8)
A 		28
B 3.5
(-3)
A 		13.7
(-0.6)
A 		17.9
(0.4)
P 		17.9
(0.4)
M 		28.7
(3)
P 		13.1
(-0.7)
P 		25
C 20.2
(2.8)
A 		15.1
(-3)
P 		20.4
(3)
A 		18.7
(1.1)
P 		17.3
(-0.5)
A 		19.5
(2)
P 		5
avr 8.4
(-3) 		14.6
(-0.7) 		19.8
(1.1) 		22
(1.9) 		24.9
(3) 		14.8
(-0.7) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179702_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16878
Sequence Type Exemplar sequence
Representative Public ID Y62H9A.1 NCBI
Target Description Y62H9A.1 /REP_DB=WormBase Gene ID /WP=CE19237 /TR=Q9XWT7 /GB=CAA21558.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077581(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077581 NCBI Caenorhabditis elegans Y62H9A.1 (Y62H9A.1) mRNA, complete cds. 11/11 None
GENEFINDER00000025472 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11875575:11877163:1 11/11 None
Y62H9A.1 ENSEMBL cdna:known chromosome:CEL140:X:11875575:11877163:1 gene:Y62H9A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11875574-11877163(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y62H9A.1
Entrez Gene 190459 Entrez gene
SwissProt Q9XWT7 EMBL-EBI
WormBase CE19237 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21558 Hypothetical protein Y62H9A.1 [Caenorhabditis elegans] ref|NP_509982.1| Y62H9A.1 [Caenorhabditis elegans] 0.0
blast CAE69413 Hypothetical protein CBG15575 [Caenorhabditis briggsae] 1.0E-158
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509982.1 7 30-48,61-83,103-125,145-167,210-232,253-275,290-312
Y62H9A.1 7 30-48,61-83,103-125,145-167,210-232,253-275,290-312
GENEFINDER00000025472 7 30-48,61-83,103-125,145-167,210-232,253-275,290-312
Sequence
Target Sequence 
>C. ELEGANS:179702_AT
taagcaaacactgatccagctcaaaaacgctttggcaattagtctctggtacttgctgca
gtttggtgttttagttggaattccagctgcaacagcaatggcattattattgatgcaata
cacacctttcgaaggttttccatttgcaatggtagtgttagctccaactcaactcacatg
tccagttatctgtatcctatacttaatacttatcaaaccgcttcgttatggtttttttaa
actagtgggtcttcataagtatgttccaagaaaccaaccaaaagcagtaacgcaaacaca
attatcaacgttcacatctcacgttccatcaagaccgacaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAGCAAACACTGATCCAGCTCAAA 600 637 738 Antisense
ACGCTTTGGCAATTAGTCTCTGGTA 405 89 764 Antisense
GTCTCTGGTACTTGCTGCAGTTTGG 354 469 779 Antisense
TGATGCAATACACACCTTTCGAAGG 131 567 848 Antisense
CTTTCGAAGGTTTTCCATTTGCAAT 670 219 863 Antisense
GTAGTGTTAGCTCCAACTCAACTCA 572 455 889 Antisense
AACTCAACTCACATGTCCAGTTATC 668 139 903 Antisense
GTCCAGTTATCTGTATCCTATACTT 58 477 917 Antisense
AATACTTATCAAACCGCTTCGTTAT 332 171 942 Antisense
ATCAACGTTCACATCTCACGTTCCA 570 25 1041 Antisense
TCACGTTCCATCAAGACCGACAAAT 589 625 1056 Antisense
Sequence Source Affymetrix Proprietary Database