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[179701_s_at]

Description C10F3.1 /REP_DB=WormBase Gene ID /WP=CE08066 /TR=O16883 /GB=AAB69883.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 87      6grp_total > 77      4grp_total > 01      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 60.6
(-2.3)
P 		48.8
(-3)
M 		101.9
(0.2)
P 		148.7
(3)
P 		100
B 62.1
(-1.7)
P 		38.5
(-3)
A 		61.6
(-1.8)
M 		150.3
(3)
P 		112
C 65.8
(-2.4)
P 		55.1
(-3)
A 		73.1
(-2)
P 		164.3
(3)
P 		109
avr 62.8
(-2.1) 		47.5
(-3) 		78.9
(-1.2) 		154.4
(3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 665
1 2 3 4 5 6 range
A 85.9
(-2.4)
P 		45.6
(-3)
P 		57
(-2.8)
P 		170.9
(-1.3)
P 		255.7
(-0.1)
P 		484.4
(3)
P 		439
B 42.4
(-3)
P 		61.6
(-2.8)
P 		74.3
(-2.7)
P 		113.4
(-2.3)
P 		237.6
(-1.1)
P 		655.1
(3)
P 		613
C 20.2
(-3)
A 		108.9
(-2.2)
P 		61.1
(-2.6)
P 		171.7
(-1.6)
P 		172.5
(-1.6)
P 		684.7
(3)
P 		665
avr 49.5
(-3) 		72
(-2.8) 		64.1
(-2.8) 		152
(-1.9) 		221.9
(-1.1) 		608.1
(3) 		559
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 22.1
(1.3)
P 		10.6
(-3)
M 		26.6
(3)
P 		21.8
(1.2)
P 		16
B 19.8
(-0.3)
P 		9.5
(-3)
A 		14.3
(-1.7)
M 		32
(3)
P 		23
C 21.8
(0)
P 		15.9
(-3)
A 		25.5
(1.9)
P 		27.7
(3)
P 		12
avr 21.2
(0.6) 		12
(-3) 		22.1
(1) 		27.2
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 237
1 2 3 4 5 6 range
A 15.8
(-2.8)
P 		16.2
(-2.8)
P 		12.4
(-3)
P 		43.3
(-1.2)
P 		77.2
(0.7)
P 		117.9
(3)
P 		106
B 14.8
(-3)
P 		20.5
(-2.9)
P 		18.1
(-2.9)
P 		30
(-2.6)
P 		96.5
(-0.9)
P 		244.3
(3)
P 		230
C 7.5
(-3)
A 		33.2
(-2.3)
P 		15.6
(-2.8)
P 		34.5
(-2.3)
P 		55.8
(-1.7)
P 		229.2
(3)
P 		222
avr 12.7
(-3) 		23.3
(-2.7) 		15.4
(-2.9) 		35.9
(-2.2) 		76.5
(-0.9) 		197.1
(3) 		184
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179701_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12148
Sequence Type Exemplar sequence
Representative Public ID C10F3.1 NCBI
Target Description C10F3.1 /REP_DB=WormBase Gene ID /WP=CE08066 /TR=O16883 /GB=AAB69883.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072155(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072155 NCBI Caenorhabditis elegans C10F3.1 (C10F3.1) mRNA, complete cds. 11/11 None
SNAP00000029260 ENSEMBL cdna:SNAP chromosome:CEL140:V:5998889:6001860:1 11/11 None
GENEFINDER00000029264 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5999029:6001860:1 11/11 None
C10F3.1 ENSEMBL cdna:known chromosome:CEL140:V:5998951:6001877:1 gene:C10F3.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5999028-6001860(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C10F3.1
Entrez Gene 178986 Entrez gene
SwissProt O16883 EMBL-EBI
WormBase CE08066 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB69883 Hypothetical protein C10F3.1 [Caenorhabditis elegans] ref|NP_504556.3| C10F3.1 [Caenorhabditis elegans] 0.0
blast CAE64530 Hypothetical protein CBG09272 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:179701_S_AT
gaatccatcgagtcttctggagagttttctggttcttcgggagaaggctctggtgatact
gcatcgtctgatacctcgattgatgataaatccataatacggtcaggagaaggttcggct
gagagtgtttctgaaattttgcaagaagcttccggagaagatgctcctacactcacgcca
acatctgaggaatcaactggctata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCCATCGAGTCTTCTGGAGAGT 592 329 1774 Antisense
TGGAGAGTTTTCTGGTTCTTCGGGA 102 547 1791 Antisense
AGAAGGCTCTGGTGATACTGCATCG 429 75 1815 Antisense
GATACTGCATCGTCTGATACCTCGA 114 425 1828 Antisense
CGTCTGATACCTCGATTGATGATAA 213 247 1838 Antisense
AATACGGTCAGGAGAAGGTTCGGCT 545 169 1869 Antisense
AGGTTCGGCTGAGAGTGTTTCTGAA 544 57 1884 Antisense
GAAATTTTGCAAGAAGCTTCCGGAG 514 363 1906 Antisense
GGAGAAGATGCTCCTACACTCACGC 635 519 1927 Antisense
CTACACTCACGCCAACATCTGAGGA 384 227 1940 Antisense
ACATCTGAGGAATCAACTGGCTATA 193 105 1954 Antisense
Sequence Source Affymetrix Proprietary Database