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[179700_at]

Description C10F3.1 /REP_DB=WormBase Gene ID /WP=CE08066 /TR=O16883 /GB=AAB69883.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 86      4grp_total > 01      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 2
(-3)
A 		2
(-3)
A 		3.1
(-2.9)
A 		60.3
(3)
A 		58
B 3.6
(-2.7)
A 		2.6
(-3)
A 		5.2
(-2.2)
A 		23.1
(3)
A 		21
C 1.7
(-3)
A 		3.4
(-2.6)
A 		4.8
(-2.3)
A 		27.3
(3)
A 		26
avr 2.4
(-3) 		2.7
(-2.9) 		4.4
(-2.7) 		36.9
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 1.8
(-3)
A 		3.7
(-2.9)
A 		38.7
(-0.8)
A 		37.1
(-0.9)
A 		42.7
(-0.5)
P 		101.2
(3)
P 		99
B 1.3
(-3)
A 		2.3
(-2.9)
A 		3.1
(-2.9)
A 		54.1
(-0.2)
A 		72.2
(0.8)
P 		113.4
(3)
P 		112
C 4.3
(-3)
A 		5
(-3)
A 		5.3
(-3)
A 		31.5
(-1.9)
A 		55.5
(-1)
P 		158.7
(3)
P 		154
avr 2.5
(-3) 		3.7
(-2.9) 		15.7
(-2.4) 		40.9
(-1.1) 		56.8
(-0.3) 		124.4
(3) 		122
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.7
(-2.8)
A 		0.4
(-3)
A 		0.8
(-2.7)
A 		8.8
(3)
A 		8
B 1.2
(-2.2)
A 		0.6
(-3)
A 		1.2
(-2.2)
A 		4.9
(3)
A 		4
C 0.6
(-3)
A 		1
(-2.4)
A 		1.7
(-1.4)
A 		4.6
(3)
A 		4
avr 0.8
(-2.9) 		0.7
(-3) 		1.2
(-2.4) 		6.1
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 0.3
(-3)
A 		1.3
(-2.8)
A 		8.4
(-1)
A 		9.4
(-0.8)
A 		12.9
(0.1)
P 		24.6
(3)
P 		24
B 0.4
(-3)
A 		0.8
(-2.9)
A 		0.8
(-2.9)
A 		14.3
(-1)
A 		29.3
(1.1)
P 		42.3
(3)
P 		42
C 1.6
(-3)
A 		1.5
(-3)
A 		1.3
(-3)
A 		6.3
(-2.4)
A 		18
(-1.1)
P 		53.1
(3)
P 		52
avr 0.8
(-3) 		1.2
(-2.9) 		3.5
(-2.6) 		10
(-1.6) 		20.1
(-0) 		40
(3) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179700_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12148
Sequence Type Exemplar sequence
Representative Public ID C10F3.1 NCBI
Target Description C10F3.1 /REP_DB=WormBase Gene ID /WP=CE08066 /TR=O16883 /GB=AAB69883.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072155(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072155 NCBI Caenorhabditis elegans C10F3.1 (C10F3.1) mRNA, complete cds. 11/11 None
SNAP00000029260 ENSEMBL cdna:SNAP chromosome:CEL140:V:5998889:6001860:1 11/11 None
GENEFINDER00000029264 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5999029:6001860:1 11/11 None
C10F3.1 ENSEMBL cdna:known chromosome:CEL140:V:5998951:6001877:1 gene:C10F3.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5999028-6001860(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C10F3.1
Entrez Gene 178986 Entrez gene
SwissProt O16883 EMBL-EBI
WormBase CE08066 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB69883 Hypothetical protein C10F3.1 [Caenorhabditis elegans] ref|NP_504556.3| C10F3.1 [Caenorhabditis elegans] 0.0
blast CAE64530 Hypothetical protein CBG09272 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:179700_AT
gatcattctggattcggcgagtcttccggatcatcaggagaatcgattgaacttcgagat
tccggagaaggttctgccgaatacgacgcaagtggatcgtccggcgataactctggagat
tttaacagttctggatcttctggcgaagcttcaggagttggtgaatcttctggatcagag
gaccaaggatctggaaactacaagaaaattgaagtcatcgaatcttctggagattatgag
ttttctggatcttcgaatgaatccatagaacaatcaaaagaaggttcggccgcgagtatt
tatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCATTCTGGATTCGGCGAGTCTT 697 419 1984 Antisense
TGGATTCGGCGAGTCTTCCGGATCA 576 549 1992 Antisense
CTTCCGGATCATCAGGAGAATCGAT 252 219 2006 Antisense
GATTGAACTTCGAGATTCCGGAGAA 68 435 2028 Antisense
GAGAAGGTTCTGCCGAATACGACGC 257 391 2048 Antisense
ACGACGCAAGTGGATCGTCCGGCGA 291 89 2066 Antisense
ATCGTCCGGCGATAACTCTGGAGAT 310 35 2079 Antisense
TAACAGTTCTGGATCTTCTGGCGAA 95 639 2106 Antisense
GGATCTTCTGGCGAAGCTTCAGGAG 315 511 2116 Antisense
GAAGTCATCGAATCTTCTGGAGATT 233 337 2194 Antisense
GAAGGTTCGGCCGCGAGTATTTATG 644 333 2263 Antisense
Sequence Source Affymetrix Proprietary Database