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[179699_at]

Description R13F6.5 /REP_DB=WormBase Gene ID /WP=CE00792 /TR=Q21981 /GB=AAC47045.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 97      6grp_total > 88      4grp_total > 16      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 33.8
(-2.6)
P 		27.8
(-3)
A 		79.4
(0.3)
A 		122
(3)
M 		94
B 26.8
(-3)
A 		92.8
(3)
P 		62.2
(0.2)
A 		65.5
(0.5)
A 		66
C 75
(3)
A 		46.4
(-2.4)
M 		43.4
(-3)
A 		74.9
(3)
P 		32
avr 45.2
(-3) 		55.7
(-1.5) 		61.7
(-0.7) 		87.5
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 73.6
(-1.6)
P 		55.3
(-3)
A 		94.9
(0.1)
A 		89.7
(-0.3)
P 		104.7
(0.8)
P 		133.1
(3)
P 		78
B 67.7
(-0.5)
P 		68.4
(-0.5)
P 		58.8
(-1.2)
P 		37.1
(-3)
A 		110.8
(3)
P 		110.4
(3)
P 		74
C 30.8
(-3)
A 		103.5
(3)
P 		54
(-1.1)
P 		89.1
(1.8)
A 		72
(0.4)
P 		89.2
(1.8)
P 		73
avr 57.4
(-3) 		75.7
(-0.9) 		69.2
(-1.7) 		72
(-1.4) 		95.8
(1.3) 		110.9
(3) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 12.3
(-0.4)
P 		6
(-3)
A 		20.8
(3)
A 		17.9
(1.8)
M 		15
B 8.6
(-3)
A 		22.9
(3)
P 		14.4
(-0.6)
A 		14
(-0.7)
A 		14
C 24.8
(3)
A 		13.3
(-2.7)
M 		15.1
(-1.8)
A 		12.6
(-3)
P 		12
avr 15.2
(-0.6) 		14.1
(-3) 		16.8
(3) 		14.8
(-1.4) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 13.6
(-3)
P 		19.7
(-1.1)
A 		20.7
(-0.7)
A 		22.7
(-0.1)
P 		31.6
(2.7)
P 		32.4
(3)
P 		19
B 23.6
(-0.6)
P 		22.8
(-0.8)
P 		14.3
(-2.2)
P 		9.8
(-3)
A 		45
(3)
P 		41.2
(2.4)
P 		35
C 11.4
(-3)
A 		31.6
(3)
P 		13.8
(-2.3)
P 		17.9
(-1.1)
A 		23.3
(0.5)
P 		29.9
(2.5)
P 		20
avr 16.2
(-3) 		24.7
(-0.2) 		16.3
(-3) 		16.8
(-2.8) 		33.3
(2.6) 		34.5
(3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179699_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6861
Sequence Type Exemplar sequence
Representative Public ID R13F6.5 NCBI
Target Description R13F6.5 /REP_DB=WormBase Gene ID /WP=CE00792 /TR=Q21981 /GB=AAC47045.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066087(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066087 NCBI Caenorhabditis elegans R13F6.5 (R13F6.5) mRNA, complete cds. 11/11 None
SNAP00000003258 ENSEMBL cdna:SNAP chromosome:CEL140:III:6847336:6848987:-1 9/11 None
GENEFINDER00000003267 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6847336:6848987:-1 11/11 None
R13F6.5 ENSEMBL cdna:known chromosome:CEL140:III:6847567:6848987:-1 gene:R13F6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6847565-6848986(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R13F6.5
Entrez Gene 187870 Entrez gene
WormBase CE38973 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC47045 Hypothetical protein R13F6.5 [Caenorhabditis elegans] 1.0E-149
blast NP_498488 R13F6.5 [Caenorhabditis elegans] 1.0E-128
blast AAC47045 Hypothetical protein R13F6.5 [Caenorhabditis elegans] 1.0E-127
blast NP_498488 R13F6.5 [Caenorhabditis elegans] 1.0E-126
blast AAC47045 Hypothetical protein R13F6.5 [Caenorhabditis elegans] 1.0E-119
blast CAE71141 Hypothetical protein CBG17996 [Caenorhabditis briggsae] 1.0E-115
blast CAE71141 Hypothetical protein CBG17996 [Caenorhabditis briggsae] 1.0E-100
Protein Domains
Database ID Description E-Value
Pfam IPR001594 EMBL-EBI Zn-finger, DHHC type 1.4E-34
Pfam IPR001594 EMBL-EBI Zn-finger, DHHC type 5.4E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498488.1 4 9-31,36-58,126-147,170-187
R13F6.5 4 9-31,36-58,126-147,170-187
SNAP00000003258 2 9-31,36-58
GENEFINDER00000003267 4 9-31,36-58,126-147,170-187
Sequence
Target Sequence 
>C. ELEGANS:179699_AT
gggtgcttgcaaacatcggatggccgattgcattcacgttctggtatcaaatcatagtgg
tactgtacgcagctgatggaaccatcagtcaatgggctctttactactttcactttctat
ggattatcatcgtctgctcctatttttcggcatcgttcacgccaccgacaaaatgtcgag
atgttgagaaggtggaacattgtgataaggaaataaaggaagacgtttgccagctctgca
actaccgtaagcctccacgttggcatcattgtcggaggtgcaatctatgtgttcatcgca
tggatcatcactgtcctattctgcagttgtgcatccacagtggcaatcacaaatattttc
tactcttcctagtttggcctctacaacttgcaattttcacaatttggcatggttattacg
acttttggaaaacgataagaagcgtttatactgccgaaattttaagcacttccgaacaat
tgaagggaacgggagtatcaaatgcactgatggttggaattgcagctctgtatcttctta
aaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTGCTTGCAAACATCGGATGGCC 533 497 35 Antisense
GTCAATGGGCTCTTTACTACTTTCA 148 463 122 Antisense
ATGGATTATCATCGTCTGCTCCTAT 513 51 153 Antisense
TGCTCCTATTTTTCGGCATCGTTCA 8 581 169 Antisense
CGTTCACGCCACCGACAAAATGTCG 349 247 188 Antisense
AAAGGAAGACGTTTGCCAGCTCTGC 634 119 249 Antisense
TAAGCCTCCACGTTGGCATCATTGT 357 637 282 Antisense
TGGATCATCACTGTCCTATTCTGCA 40 551 335 Antisense
TATTTTCTACTCTTCCTAGTTTGGC 232 663 388 Antisense
GGCCTCTACAACTTGCAATTTTCAC 266 543 410 Antisense
ATTGCAGCTCTGTATCTTCTTAAAA 588 5 553 Antisense
Sequence Source Affymetrix Proprietary Database