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[179698_at]

Description F47B7.7 /REP_DB=WormBase Gene ID /WP=CE02748 /TR=Q20515 /GB=AAA80372.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 4grp_highest_8_8 > 57      4grp_high_8_8 > 34      6grp_total > 14      4grp_total > 46      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 793
1 2 3 4 range
A 916.3
(3)
P 		582
(0.2)
P 		212
(-3)
P 		217
(-3)
P 		704
B 895.9
(3)
P 		480.7
(-1.6)
P 		350.7
(-3)
P 		357.6
(-2.9)
P 		545
C 1005.3
(3)
P 		582.5
(-0.4)
P 		287.6
(-2.7)
P 		254.7
(-3)
P 		751
avr 939.2
(3) 		548.4
(-0.5) 		283.4
(-2.9) 		276.4
(-3) 		663

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 495
1 2 3 4 5 6 range
A 474
(1.6)
P 		578.7
(3)
P 		338.7
(-0.2)
P 		238.9
(-1.5)
P 		197
(-2)
P 		122.3
(-3)
A 		456
B 514.2
(3)
P 		477.2
(2.5)
P 		305.7
(0.1)
P 		296.7
(-0.1)
P 		198.2
(-1.4)
P 		87.9
(-3)
M 		426
C 583.3
(3)
P 		444.9
(1.3)
P 		427.7
(1.1)
P 		252.2
(-1.1)
P 		193.6
(-1.9)
P 		101.9
(-3)
A 		481
avr 523.8
(3) 		500.3
(2.7) 		357.4
(0.6) 		262.6
(-0.7) 		196.3
(-1.7) 		104
(-3) 		420
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 302
1 2 3 4 range
A 333.6
(3)
P 		126.3
(-1.1)
P 		55.4
(-2.5)
P 		31.8
(-3)
P 		302
B 285.7
(3)
P 		118.7
(-1.8)
P 		81.3
(-2.9)
P 		76.2
(-3)
P 		210
C 332.8
(3)
P 		167.5
(-0.4)
P 		100.2
(-1.8)
P 		42.9
(-3)
P 		290
avr 317.4
(3) 		137.5
(-1) 		79
(-2.4) 		50.3
(-3) 		267

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 186
1 2 3 4 5 6 range
A 87.4
(-1)
P 		205.8
(3)
P 		73.8
(-1.5)
P 		60.6
(-2)
P 		59.5
(-2)
P 		29.8
(-3)
A 		176
B 178.9
(3)
P 		158.8
(2.2)
P 		74.2
(-1.3)
P 		78.6
(-1.1)
P 		80.5
(-1)
P 		32.8
(-3)
M 		146
C 216.2
(3)
P 		135.8
(0.4)
P 		108.9
(-0.5)
P 		50.7
(-2.5)
P 		62.7
(-2.1)
P 		34.1
(-3)
A 		182
avr 160.8
(2.7) 		166.8
(3) 		85.6
(-0.6) 		63.3
(-1.6) 		67.6
(-1.4) 		32.2
(-3) 		135
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179698_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18579
Sequence Type Exemplar sequence
Representative Public ID F47B7.7 NCBI
Target Description F47B7.7 /REP_DB=WormBase Gene ID /WP=CE02748 /TR=Q20515 /GB=AAA80372.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076254(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076254 NCBI Caenorhabditis elegans F47B7.7 (F47B7.7) mRNA, complete cds. 10/11 None
GENEFINDER00000025975 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3778300:3781054:-1 11/11 None
SNAP00000025971 ENSEMBL cdna:SNAP chromosome:CEL140:X:3778508:3781201:-1 10/11 None
F47B7.7 ENSEMBL cdna:known chromosome:CEL140:X:3778075:3781102:-1 gene:F47B7.7 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3778508-3781055(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47B7.7
Entrez Gene 180665 Entrez gene
SwissProt Q20515 EMBL-EBI
WormBase CE35544 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA80372 Hypothetical protein F47B7.7 [Caenorhabditis elegans] ref|NP_508655.2| F47B7.7 [Caenorhabditis elegans] 0.0
blast AAA80372 Hypothetical protein F47B7.7 [Caenorhabditis elegans] ref|NP_508655.2| F47B7.7 [Caenorhabditis elegans] 1.0E-176
blast CAE68481 Hypothetical protein CBG14282 [Caenorhabditis briggsae] 1.0E-172
blast CAE68481 Hypothetical protein CBG14282 [Caenorhabditis briggsae] 1.0E-169
blast CAE68481 Hypothetical protein CBG14282 [Caenorhabditis briggsae] 1.0E-164
blast CAD20601 putative ES protein [Ostertagia ostertagi] 2.0E-55
Sequence
Target Sequence 
>C. ELEGANS:179698_AT
cagaccgttccagaagtgtatccccaatgcctgctgaagctccaggacaaactgtgttcg
acaaatacgctaaatacgagagacaccgcaaagttcgaaatttgaaactatcaaacaata
tttttacatttacagactccatcaccagatacggaaccaagtggggagatgctggatacg
tctcgcacagcccatcgccaaccggcgatgaaccacaagccattccacatcgtactcaag
cactttctccacgaccagcttccagaactcgccagtatgacagcgaatacagcgccgatt
tcttgaagaacgactcggcgggcagtgtcaacgaactcaaggtattaacgaaaaacatca
agggagactatgtgccgtacagaaccaccgggtacggagcatatcacgtaaagagacagt
atgatttgagcccaagatctatgggaagtgattatgcgacgagcagtggatccgagcagt
catcccccatcccagctcggcgggagagatcagctgatgagattgttttgagtgcctacc
acgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGACCGTTCCAGAAGTGTATCCCC 378 201 464 Antisense
ACATTTACAGACTCCATCACCAGAT 345 105 589 Antisense
AGATGCTGGATACGTCTCGCACAGC 495 67 630 Antisense
GCCAACCGGCGATGAACCACAAGCC 559 277 660 Antisense
ATTCCACATCGTACTCAAGCACTTT 555 7 685 Antisense
GCGAATACAGCGCCGATTTCTTGAA 276 289 746 Antisense
TCGGCGGGCAGTGTCAACGAACTCA 471 607 778 Antisense
GACTATGTGCCGTACAGAACCACCG 227 373 829 Antisense
CGAGCAGTGGATCCGAGCAGTCATC 666 249 923 Antisense
CCATCCCAGCTCGGCGGGAGAGATC 442 271 950 Antisense
GATTGTTTTGAGTGCCTACCACGCA 369 421 984 Antisense
Sequence Source Affymetrix Proprietary Database