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[179697_at]

Description Y75B8A.6 /REP_DB=WormBase Gene ID /WP=CE24669 /TR=Q9U1S4 /GB=CAA22096.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 28      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 67.3
(-3)
A 		85.4
(-0.5)
A 		69.6
(-2.7)
A 		111.4
(3)
A 		44
B 60.3
(1.6)
A 		74.7
(3)
A 		13.6
(-3)
A 		29.5
(-1.4)
A 		61
C 50.6
(-2.4)
A 		66.3
(-0.9)
A 		44.6
(-3)
A 		105.2
(3)
A 		61
avr 59.4
(-0.4) 		75.5
(2) 		42.6
(-3) 		82
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 60.4
(3)
A 		9
(-2.5)
A 		29
(-0.4)
A 		29.4
(-0.3)
A 		11.7
(-2.2)
A 		4.5
(-3)
A 		56
B 30.1
(0.4)
A 		16.9
(-1.4)
A 		5
(-3)
A 		49.8
(3)
A 		24.2
(-0.4)
A 		32.6
(0.7)
A 		45
C 37.4
(1.2)
A 		35
(0.9)
A 		50.1
(3)
A 		7.4
(-3)
A 		8.9
(-2.8)
A 		8.7
(-2.8)
A 		43
avr 42.6
(3) 		20.3
(-1.8) 		28
(-0.2) 		28.9
(0) 		14.9
(-3) 		15.3
(-2.9) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 24.5
(3)
A 		18.5
(-1.4)
A 		18.2
(-1.6)
A 		16.3
(-3)
A 		8
B 19.2
(3)
A 		18.5
(2.7)
A 		3.1
(-3)
A 		6.3
(-1.8)
A 		16
C 16.8
(-0.8)
A 		19.1
(3)
A 		15.5
(-3)
A 		17.7
(0.7)
A 		4
avr 20.2
(3) 		18.7
(1.9) 		12.3
(-3) 		13.4
(-2.2) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 11.1
(3)
A 		3.2
(-1.7)
A 		6.3
(0.1)
A 		7.4
(0.8)
A 		3.5
(-1.6)
A 		1.1
(-3)
A 		10
B 10.5
(1.7)
A 		5.6
(-0.8)
A 		1.2
(-3)
A 		13.2
(3)
A 		9.8
(1.3)
A 		12.2
(2.5)
A 		12
C 13.9
(3)
A 		10.7
(1.5)
A 		12.8
(2.5)
A 		1.5
(-3)
A 		2.9
(-2.3)
A 		2.9
(-2.3)
A 		12
avr 11.8
(3) 		6.5
(-2) 		6.8
(-1.7) 		7.4
(-1.1) 		5.4
(-3) 		5.4
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179697_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6863
Sequence Type Exemplar sequence
Representative Public ID Y75B8A.6 NCBI
Target Description Y75B8A.6 /REP_DB=WormBase Gene ID /WP=CE24669 /TR=Q9U1S4 /GB=CAA22096.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067178(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067178 NCBI Caenorhabditis elegans Y75B8A.6 (Y75B8A.6) mRNA, complete cds. 11/11 None
GENEFINDER00000020177 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12122802:12130214:-1 10/11 None
Y75B8A.6 ENSEMBL cdna:known chromosome:CEL140:III:12123948:12130214:-1 gene:Y75B8A.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020070 6/11 Cross Hyb Matching Probes None
SNAP00000020071 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12123943-12130210(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y75B8A.6
Entrez Gene 176645 Entrez gene
SwissProt Q9U1S4 EMBL-EBI
WormBase CE24669 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA22096 Hypothetical protein Y75B8A.6 [Caenorhabditis elegans] ref|NP_499579.1| Y75B8A.6 [Caenorhabditis elegans] 1.0E-172
blast CAE75092 Hypothetical protein CBG23013 [Caenorhabditis briggsae] 1.0E-115
blast CAE75090 Hypothetical protein CBG23011 [Caenorhabditis briggsae] 6.0E-74
blast CAA22096 Hypothetical protein Y75B8A.6 [Caenorhabditis elegans] ref|NP_499579.1| Y75B8A.6 [Caenorhabditis elegans] 5.0E-63
blast CAE75092 Hypothetical protein CBG23013 [Caenorhabditis briggsae] 2.0E-46
blast CAE75090 Hypothetical protein CBG23011 [Caenorhabditis briggsae] 1.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR002857 EMBL-EBI Zn-finger, CXXC type 1.1E-32
Pfam IPR002857 EMBL-EBI Zn-finger, CXXC type 1.0E-17
Pfam IPR002857 EMBL-EBI Zn-finger, CXXC type 4.5E-6
Pfam IPR002857 EMBL-EBI Zn-finger, CXXC type 5.7E-35
Pfam IPR002857 EMBL-EBI Zn-finger, CXXC type 7.0E-29
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000020177 2 181-203,513-535
Sequence
Target Sequence 
>C. ELEGANS:179697_AT
gacacatccccggagcaatgtgcgccaagaaacgttgcaacaatgcccaaagcatagagt
gtgtgccatcattaatgtctcagaatccagcagatttcgttcaacgagctccgaaaagga
gttatgagttgataaatccagtgatatctcaacaacagcaacagcaacaatcccaaatgc
attttgatgtgaaacgagttcaatatatgacgggtccaccaccacaaatgatgcagcaga
tgcaaatgcaagcaccaccacagcagcagatcccccaaccacagacgcctcagcaacagg
ttcaacaacatcaacagagacctaattacctaagtgttcatgctcggttaatggttcaag
ctccaccacaagtaatcacagctccggctccaattcctcttccacaaggacaaatgactc
atatgccgcaacatggccttgacatcccataccttattccaacatcatttgtgcaagcag
tccaaggccaggctgatccattttatccgtcaaaatttgagctggactttgagcataatg
gtgatccatttgtaccgccaagttatgcacaggata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACACATCCCCGGAGCAATGTGCGC 264 367 527 Antisense
GTGTGTGCCATCATTAATGTCTCAG 640 487 585 Antisense
AATCCAGCAGATTTCGTTCAACGAG 609 167 610 Antisense
GATGCAAATGCAAGCACCACCACAG 396 413 765 Antisense
TTACCTAAGTGTTCATGCTCGGTTA 708 679 852 Antisense
ACCACAAGTAATCACAGCTCCGGCT 338 85 891 Antisense
TATGCCGCAACATGGCCTTGACATC 300 657 948 Antisense
TTGACATCCCATACCTTATTCCAAC 132 705 965 Antisense
AGCAGTCCAAGGCCAGGCTGATCCA 637 75 1002 Antisense
ATGGTGATCCATTTGTACCGCCAAG 688 49 1064 Antisense
GTACCGCCAAGTTATGCACAGGATA 32 457 1078 Antisense
Sequence Source Affymetrix Proprietary Database