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[179696_at]

Description Y51H1A.2 /REP_DB=WormBase Gene ID /WP=CE20283 /TR=Q9XWJ7 /GB=CAA21666.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 4grp_highest_8_8 > 63      4grp_high_8_8 > 28      6grp_total > 29      4grp_total > 35      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 163.1
(2)
P 		119.8
(-1.2)
P 		95.9
(-3)
P 		177.1
(3)
P 		81
B 81.3
(-3)
P 		139.8
(3)
P 		104.3
(-0.6)
P 		128.7
(1.9)
P 		59
C 127.1
(-0.1)
P 		162.8
(3)
P 		114.7
(-1.2)
P 		93.7
(-3)
P 		69
avr 123.8
(0.2) 		140.8
(3) 		105
(-3) 		133.2
(1.7) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 127.9
(1.5)
A 		141.7
(2.5)
P 		62.9
(-3)
A 		67
(-2.7)
M 		149.3
(3)
P 		117.4
(0.8)
P 		86
B 126.4
(3)
A 		95.9
(-1.4)
A 		108.8
(0.4)
A 		115.2
(1.4)
A 		91.2
(-2.1)
P 		85.2
(-3)
P 		41
C 145.9
(2.9)
P 		100.6
(-0.1)
A 		134.6
(2.2)
P 		98.4
(-0.3)
A 		146.9
(3)
P 		57.9
(-3)
A 		89
avr 133.4
(3) 		112.7
(0.3) 		102.1
(-1) 		93.5
(-2.1) 		129.1
(2.4) 		86.8
(-3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 59.4
(3)
P 		26
(-2.8)
P 		25.1
(-3)
P 		25.9
(-2.9)
P 		34
B 25.9
(-2)
P 		34.5
(3)
P 		24.2
(-3)
P 		27.4
(-1.1)
P 		10
C 42.1
(2.1)
P 		46.8
(3)
P 		40
(1.7)
P 		15.8
(-3)
P 		31
avr 42.5
(3) 		35.8
(0.9) 		29.8
(-0.9) 		23
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 23.6
(-1.4)
A 		50.4
(3)
P 		13.7
(-3)
A 		17
(-2.5)
M 		45.1
(2.1)
P 		28.6
(-0.6)
P 		37
B 44
(3)
A 		31.9
(-1.1)
A 		26.4
(-3)
A 		30.5
(-1.6)
A 		37
(0.6)
P 		31.8
(-1.2)
P 		18
C 54.1
(3)
P 		30.7
(-1)
A 		34.3
(-0.4)
P 		19.8
(-2.9)
A 		47.5
(1.9)
P 		19.4
(-3)
A 		35
avr 40.6
(2.3) 		37.7
(1.4) 		24.8
(-2.3) 		22.4
(-3) 		43.2
(3) 		26.6
(-1.8) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179696_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2970
Sequence Type Exemplar sequence
Representative Public ID Y51H1A.2 NCBI
Target Description Y51H1A.2 /REP_DB=WormBase Gene ID /WP=CE20283 /TR=Q9XWJ7 /GB=CAA21666.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064505(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064505 NCBI Caenorhabditis elegans Y51H1A.2 (Y51H1A.2) mRNA, complete cds. 9/11 None
GENEFINDER00000044419 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13856908:13871795:-1 11/11 None
Y51H1A.2 ENSEMBL cdna:known chromosome:CEL140:II:13862533:13872188:-1 gene:Y51H1A.2 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13862529-13872132(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51H1A.2
Entrez Gene 175037 Entrez gene
SwissProt Q9XWJ7 EMBL-EBI
WormBase CE32758 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21666 Hypothetical protein Y51H1A.2 [Caenorhabditis elegans] ref|NP_496906.2| Y51H1A.2 [Caenorhabditis elegans] 0.0
blast CAE73264 Hypothetical protein CBG20680 [Caenorhabditis briggsae] 0.0
blast CAD57710 Hypothetical protein Y51H1A.1b [Caenorhabditis elegans] emb|CAD57692.1| Hypothetical protein Y51H1A.1b [Caenorhabditis elegans] ref|NP_872047.1| Y51H1A.1b [Caenorhabditis elegans] 0.0
blast XP_395844 PREDICTED: similar to CG6613-PA [Apis mellifera] 6.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR004012 EMBL-EBI RUN domain 6.6E-51
Pfam IPR004012 EMBL-EBI RUN domain 6.6E-51
Sequence
Target Sequence 
>C. ELEGANS:179696_AT
cacaatcttcggaaccgtcccaaatgacgtggcattctcaccggatgacgagctgcttca
gcttcaatccaagcctatttccacgacaattgacagtggaattgctgaaatgacgtcatc
atcggctgccggaacccgtacagcttcagaagtggagccagaaggagagctccaagttga
gcgttccgtctcgtttttggaagctcttcacgagttggctggagctagaggagctagaga
cggcgcggaggaagaagccattccaccacccagaagcctatcgcttaccgatgatttttt
ggggaaaaatgaggaaaaatcggagcatgaggatgaggatcgagagatttttgatgctcc
aaagcttccagaaccatcaaaactcctaaaaatcctgaaaaccgcgcaaatttcagtatc
aatggaccccgtcgaaggcacttccataacgattttggcgccaaatccacccaccggaga
gcttaatcggagccaaccaatgtcgataccgggcggccgccggcaactaatacacagacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACAATCTTCGGAACCGTCCCAAAT 7 193 1260 Antisense
GCATTCTCACCGGATGACGAGCTGC 456 307 1291 Antisense
CTGCTTCAGCTTCAATCCAAGCCTA 446 237 1312 Antisense
TCCAAGCCTATTTCCACGACAATTG 581 587 1327 Antisense
AGAGCTCCAAGTTGAGCGTTCCGTC 470 67 1425 Antisense
GCGTTCCGTCTCGTTTTTGGAAGCT 123 289 1440 Antisense
GGAAGCTCTTCACGAGTTGGCTGGA 151 531 1458 Antisense
GAAGCCTATCGCTTACCGATGATTT 234 345 1532 Antisense
GCTTCCAGAACCATCAAAACTCCTA 315 305 1623 Antisense
TTTCAGTATCAATGGACCCCGTCGA 238 671 1670 Antisense
GCCGCCGGCAACTAATACACAGACC 666 285 1775 Antisense
Sequence Source Affymetrix Proprietary Database