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[179694_s_at]

Description F29G9.6 /REP_DB=WormBase Gene ID /WP=CE27376 /TR=O16371 /GB=AAB65901.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 27      4grp_highest_8_8 > 46      4grp_high_8_8 > 11      6grp_highest_nonorm > 80      6grp_total > 27      4grp_total > 14      6grp_highest_sub > Cu      6grp_cgc > 15      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 390
1 2 3 4 range
A 253.1
(-0.1)
P 		147.6
(-2.1)
P 		98.8
(-3)
P 		422.6
(3)
P 		324
B 332.5
(0.9)
P 		108.2
(-2.5)
P 		76.5
(-3)
P 		466.9
(3)
P 		390
C 329.5
(1.7)
P 		97.4
(-2.7)
P 		83.7
(-3)
P 		396.9
(3)
P 		313
avr 305
(0.8) 		117.7
(-2.4) 		86.3
(-3) 		428.8
(3) 		343

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 280
1 2 3 4 5 6 range
A 373.1
(3)
P 		256.8
(0.2)
P 		146.2
(-2.5)
P 		125.2
(-3)
P 		154.8
(-2.3)
P 		175.6
(-1.8)
P 		248
B 268.1
(3)
P 		232.4
(1.2)
P 		176.6
(-1.7)
P 		169
(-2.1)
P 		151.7
(-3)
P 		194.5
(-0.8)
P 		116
C 289.1
(3)
P 		236.9
(1.4)
P 		191
(0)
P 		160.6
(-0.9)
P 		92.8
(-3)
P 		215.6
(0.8)
P 		196
avr 310.1
(3) 		242
(0.7) 		171.3
(-1.7) 		151.6
(-2.4) 		133.1
(-3) 		195.2
(-0.9) 		177
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 92.2
(3)
P 		32
(-2.4)
P 		25.8
(-3)
P 		61.9
(0.3)
P 		66
B 106
(3)
P 		26.7
(-2.4)
P 		17.7
(-3)
P 		99.5
(2.6)
P 		88
C 109.1
(3)
P 		28
(-3)
P 		29.2
(-2.9)
P 		66.9
(-0.1)
P 		81
avr 102.4
(3) 		28.9
(-2.6) 		24.2
(-3) 		76.1
(1) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 68.8
(0.7)
P 		91.3
(3)
P 		31.8
(-3)
P 		31.7
(-3)
P 		46.7
(-1.5)
P 		42.8
(-1.9)
P 		60
B 93.3
(3)
P 		77.4
(1.1)
P 		42.9
(-3)
P 		44.8
(-2.8)
P 		61.6
(-0.8)
P 		72.5
(0.5)
P 		50
C 107.1
(3)
P 		72.3
(0.3)
P 		48.6
(-1.6)
P 		32.3
(-2.8)
P 		30
(-3)
P 		72.2
(0.3)
P 		77
avr 89.7
(3) 		80.3
(1.9) 		41.1
(-2.5) 		36.3
(-3) 		46.1
(-1.9) 		62.5
(-0.1) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179694_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11488
Sequence Type Exemplar sequence
Representative Public ID F29G9.6 NCBI
Target Description F29G9.6 /REP_DB=WormBase Gene ID /WP=CE27376 /TR=O16371 /GB=AAB65901.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072160(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072160 NCBI Caenorhabditis elegans DeHydrogenases, Short chain family member (dhs-17) (dhs-17) mRNA, complete cds. 11/11 None
GENEFINDER00000000287 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6029107:6037643:-1 11/11 None
F29G9.6 ENSEMBL cdna:known chromosome:CEL140:V:6028948:6037408:-1 gene:F29G9.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000275 6/11 Cross Hyb Matching Probes None
SNAP00000000276 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6029106-6033362(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol dhs-17
Ensembl F29G9.6
Entrez Gene 178990 Entrez gene
SwissProt O16371 EMBL-EBI
WormBase CE27376 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB65901 Dehydrogenases, short chain protein 17 [Caenorhabditis elegans] ref|NP_504561.1| DeHydrogenases, Short chain family member (dhs-17) [Caenorhabditis elegans] 1.0E-165
blast AAB65901 Dehydrogenases, short chain protein 17 [Caenorhabditis elegans] ref|NP_504561.1| DeHydrogenases, Short chain family member (dhs-17) [Caenorhabditis elegans] 1.0E-155
blast CAE64525 Hypothetical protein CBG09263 [Caenorhabditis briggsae] 1.0E-141
blast T31804 hypothetical protein F29G9.7 - Caenorhabditis elegans 1.0E-75
blast ZP_00590871 Short-chain dehydrogenase/reductase SDR [Prosthecochloris aestuarii DSM 271] gb|EAN23676.1| Short-chain dehydrogenase/reductase SDR [Prosthecochloris aestuarii DSM 271] 2.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 4.9E-16
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.8E-6
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 4.9E-16
Sequence
Target Sequence 
>C. ELEGANS:179694_S_AT
cgaacgtcggtttcctgagctaaatgtgttgttgtgtaatgcaggagtactgtatccaag
aagattggagaccaaagatggaatggaatctacatttcaagtcaactatcttgctcacta
ccttctgtgcaatcttctcctcccagtgctcagccacaatcgatcaaatgtgattgtagt
tggaagtgtgcttcatacgtggccatctttggattgggcagatgtaatggctacaaaaga
atacgagaaatatctacagtactcccgatctaaattaatgtgtcatttgatggcatttgc
tcttcatcggagaatgaatatcgctcgacaacatgtaaatgtgaacattatcgaattggg
aaaagaaaaggaaccgaataacaatggaaaattacgaacaacatctgccctctcctcttc
aatgtcgacattatccatttgccgccaggctggaaatctggctcaactcatcgagggccc
atgtttggaaaaaatatctggaaaatatttggatccaagtggtaaacagatgagaagcgg
ctccgacgcaaccgatgaacggcttcaggaacgcctctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAACGTCGGTTTCCTGAGCTAAAT 9 209 591 Antisense
CAGTGCTCAGCCACAATCGATCAAA 588 207 734 Antisense
GAAGTGTGCTTCATACGTGGCCATC 434 335 773 Antisense
ACGTGGCCATCTTTGGATTGGGCAG 703 93 787 Antisense
GTGTCATTTGATGGCATTTGCTCTT 157 487 870 Antisense
AATGTCGACATTATCCATTTGCCGC 248 163 1011 Antisense
AGGCTGGAAATCTGGCTCAACTCAT 106 55 1037 Antisense
TCAACTCATCGAGGGCCCATGTTTG 675 629 1053 Antisense
ACAGATGAGAAGCGGCTCCGACGCA 328 107 1116 Antisense
CTCCGACGCAACCGATGAACGGCTT 262 235 1131 Antisense
ATGAACGGCTTCAGGAACGCCTCTG 504 43 1145 Antisense
Sequence Source Affymetrix Proprietary Database