[Home] | [Total List]

[179692_at]

Description F20D1.3 /REP_DB=WormBase Gene ID /WP=CE09496 /TR=Q93535 /GB=CAB01745.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 73      6grp_high1_10_10 > 37      4grp_highest_8_8 > 0      4grp_high_8_8 > 44      6grp_highest_nonorm > 46      6grp_total > 08      4grp_total > 51      6grp_highest_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1313
1 2 3 4 range
A 2464.3
(0.2)
P 		3088
(3)
P 		2388.6
(-0.2)
P 		1774.7
(-3)
P 		1313
B 2375.8
(-1.2)
P 		2790.5
(3)
P 		2483.5
(-0.1)
P 		2194.1
(-3)
P 		596
C 2295.9
(-0.9)
P 		2718.2
(3)
P 		2317.9
(-0.7)
P 		2066
(-3)
P 		652
avr 2378.7
(-0.4) 		2865.6
(3) 		2396.7
(-0.3) 		2011.6
(-3) 		854

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1770
1 2 3 4 5 6 range
A 3178.1
(-0.4)
P 		2952.6
(-1.4)
P 		2732.6
(-2.2)
P 		3245.7
(-0.2)
P 		2545.3
(-3)
P 		4033.3
(3)
P 		1488
B 3327.5
(3)
P 		2298.4
(-2.9)
P 		2605.7
(-1.1)
P 		3018.8
(1.2)
P 		2277.9
(-3)
P 		2475.1
(-1.9)
P 		1050
C 3709.3
(2.1)
P 		2263
(-3)
P 		3978.2
(3)
P 		2753.9
(-1.3)
P 		2748.7
(-1.3)
P 		2597.9
(-1.8)
P 		1715
avr 3405
(3) 		2504.7
(-3) 		3105.5
(1) 		3006.1
(0.3) 		2524
(-2.9) 		3035.4
(0.5) 		900
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 637
1 2 3 4 range
A 897.2
(3)
P 		670.3
(0.9)
P 		624.4
(0.4)
P 		259.8
(-3)
P 		637
B 757.6
(3)
P 		689.2
(1.6)
P 		575.5
(-0.8)
P 		467.6
(-3)
P 		290
C 760
(2.4)
P 		781.5
(2.7)
P 		807.9
(3)
P 		348.4
(-3)
P 		460
avr 804.9
(3) 		713.7
(1.8) 		669.3
(1.2) 		358.6
(-3) 		446

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 821
1 2 3 4 5 6 range
A 585.8
(-3)
P 		1050.1
(3)
P 		595.1
(-2.9)
P 		823.2
(0.1)
P 		768.1
(-0.6)
P 		982
(2.1)
P 		464
B 1157.8
(3)
P 		765.1
(-1.5)
P 		632.7
(-3)
P 		799.6
(-1.1)
P 		925.5
(0.3)
P 		923
(0.3)
P 		525
C 1374.9
(3)
P 		690.5
(-2)
P 		1012.5
(0.4)
P 		553.8
(-3)
P 		889.4
(-0.5)
P 		869.7
(-0.7)
P 		821
avr 1039.5
(3) 		835.2
(-0.9) 		746.8
(-2.6) 		725.5
(-3) 		861
(-0.4) 		924.9
(0.8) 		314
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179692_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17574
Sequence Type Exemplar sequence
Representative Public ID F20D1.3 NCBI
Target Description F20D1.3 /REP_DB=WormBase Gene ID /WP=CE09496 /TR=Q93535 /GB=CAB01745.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078085(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078085 NCBI Caenorhabditis elegans F20D1.3 (F20D1.3) mRNA, complete cds. 11/11 None
GENEFINDER00000040741 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14976034:14978470:1 11/11 None
SNAP00000040730 ENSEMBL cdna:SNAP chromosome:CEL140:X:14977462:14978470:1 11/11 None
F20D1.3.2 ENSEMBL cdna:known chromosome:CEL140:X:14976031:14978623:1 gene:F20D1.3 11/11 None
F20D1.3.1 ENSEMBL cdna:known chromosome:CEL140:X:14976033:14978628:1 gene:F20D1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14976033-14978470(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F20D1.3
Entrez Gene 181593 Entrez gene
SwissProt Q93535 EMBL-EBI
WormBase CE31486 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01745 Hypothetical protein F20D1.3 [Caenorhabditis elegans] ref|NP_510486.2| F20D1.3 [Caenorhabditis elegans] 0.0
blast CAE63275 Hypothetical protein CBG07652 [Caenorhabditis briggsae] 0.0
blast CAB01745 Hypothetical protein F20D1.3 [Caenorhabditis elegans] ref|NP_510486.2| F20D1.3 [Caenorhabditis elegans] 1.0E-143
blast CAE63275 Hypothetical protein CBG07652 [Caenorhabditis briggsae] 1.0E-128
Sequence
Target Sequence 
>C. ELEGANS:179692_AT
gttgaccgtggcagcggtttcgagcgtcttttggattactgggttctcaatactcaaaca
ttccagtggcttcagattccatctcagatgccgtgcccacttatcgagcctcgcctcact
gcgtgtcactctggaaatatttacgtctggggagactttgatcaaccgcttccaggaatg
ccaccaaacggaacacatcttcgcatcctccgtgtttctggtcttgagaaagctagtcat
ccaccagcgtattccacatacaacccagcgccgccagcatacccatctctggatgagaag
tctggaaatccgccgtatccttctaacccatccaaccaaccatacccatccaacaattac
ggaaatcaaggcatagtagcgtgtaatgttcaaaatcataaaatattgttttcaggtggt
caaggacaagctcctccatacccatcatacaatccaaatcagagcaactatggaaacgcg
ggcaaccaacaaggcccatctcaagatcaatacggaaacgccggatatgatgcgaaccag
caaggcggctacactcaaacctctgatggacagaatgcctactatccaactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGACCGTGGCAGCGGTTTCGAGC 232 429 826 Antisense
GCGTCTTTTGGATTACTGGGTTCTC 429 291 849 Antisense
TCCAGTGGCTTCAGATTCCATCTCA 441 589 887 Antisense
GATCAACCGCTTCCAGGAATGCCAC 345 421 985 Antisense
CAAACGGAACACATCTTCGCATCCT 548 191 1010 Antisense
AAAGCTAGTCATCCACCAGCGTATT 426 123 1054 Antisense
GCCAGCATACCCATCTCTGGATGAG 133 281 1098 Antisense
AGAAGTCTGGAAATCCGCCGTATCC 324 75 1121 Antisense
AACCAACAAGGCCCATCTCAAGATC 542 147 1309 Antisense
GGCTACACTCAAACCTCTGATGGAC 142 537 1372 Antisense
GGACAGAATGCCTACTATCCAACTC 697 525 1393 Antisense
Sequence Source Affymetrix Proprietary Database