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[179691_at]

Description F59F3.4 /REP_DB=WormBase Gene ID /WP=CE11544 /TR=Q93808 /GB=CAA91993.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 65      6grp_high1_10_10 > 55      4grp_high_8_8 > 25      6grp_highest_nonorm > 81      6grp_total > 56      4grp_total > 39      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 404
1 2 3 4 range
A 524.5
(3)
P 		166.3
(-2.9)
M 		158.5
(-3)
A 		278.2
(-1)
P 		366
B 560.1
(3)
P 		201
(-2.5)
P 		166.8
(-3)
P 		278.8
(-1.3)
P 		393
C 562.7
(3)
P 		229.6
(-2.1)
P 		168
(-3)
M 		360
(-0.1)
P 		395
avr 549.1
(3) 		199
(-2.5) 		164.4
(-3) 		305.7
(-0.8) 		385

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 188
1 2 3 4 5 6 range
A 304.1
(1.2)
P 		352.4
(2.8)
P 		284.9
(0.5)
P 		255.2
(-0.5)
P 		181.4
(-3)
P 		358.5
(3)
P 		177
B 249
(-0.4)
P 		228.2
(-1.4)
P 		248.7
(-0.4)
P 		243.9
(-0.6)
P 		196.5
(-3)
P 		315.7
(3)
P 		119
C 284.9
(1)
P 		279.2
(0.8)
P 		335.4
(2.7)
P 		286.7
(1)
P 		170.2
(-3)
P 		343.9
(3)
P 		174
avr 279.3
(0.7) 		286.6
(1) 		289.7
(1.1) 		261.9
(0) 		182.7
(-3) 		339.4
(3) 		157
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 155
1 2 3 4 range
A 191
(3)
P 		36.1
(-3)
M 		41.4
(-2.8)
A 		40.7
(-2.8)
P 		155
B 178.6
(3)
P 		49.6
(-2.5)
P 		38.6
(-3)
P 		59.4
(-2.1)
P 		140
C 186.3
(3)
P 		66
(-2.7)
P 		58.6
(-3)
M 		60.7
(-2.9)
P 		128
avr 185.3
(3) 		50.6
(-2.8) 		46.2
(-3) 		53.6
(-2.7) 		139

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 56.1
(-2.9)
P 		125.3
(3)
P 		62
(-2.4)
P 		64.7
(-2.2)
P 		54.7
(-3)
P 		87.3
(-0.2)
P 		71
B 86.6
(-0.3)
P 		76
(-1.4)
P 		60.4
(-3)
P 		64.6
(-2.6)
P 		79.8
(-1)
P 		117.7
(3)
P 		57
C 105.6
(2.1)
P 		85.2
(0)
P 		85.4
(0)
P 		57.7
(-2.7)
P 		55.1
(-3)
P 		115.1
(3)
P 		60
avr 82.8
(-0.2) 		95.5
(1.5) 		69.3
(-2.1) 		62.3
(-3) 		63.2
(-2.9) 		106.7
(3) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179691_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16226
Sequence Type Exemplar sequence
Representative Public ID F59F3.4 NCBI
Target Description F59F3.4 /REP_DB=WormBase Gene ID /WP=CE11544 /TR=Q93808 /GB=CAA91993.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077437(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077437 NCBI Caenorhabditis elegans F59F3.4 (F59F3.4) mRNA, complete cds. 11/11 None
GENEFINDER00000038688 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11004910:11005933:-1 11/11 None
SNAP00000038683 ENSEMBL cdna:SNAP chromosome:CEL140:X:11005005:11005904:-1 9/11 None
F59F3.4 ENSEMBL cdna:known chromosome:CEL140:X:11004913:11008103:-1 gene:F59F3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11004963-11006402(-) 98.85 100.0
Public Domain and Genome References
Gene Title
Ensembl F59F3.4
Entrez Gene 186631 Entrez gene
SwissProt Q93808 EMBL-EBI
WormBase CE31550 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02674 Hypothetical protein F59F3.4 [Caenorhabditis elegans] emb|CAA91993.2| Hypothetical protein F59F3.4 [Caenorhabditis elegans] ref|NP_509838.2| F59F3.4 [Caenorhabditis elegans] 0.0
blast CAE70769 Hypothetical protein CBG17520 [Caenorhabditis briggsae] 0.0
blast CAB02674 Hypothetical protein F59F3.4 [Caenorhabditis elegans] emb|CAA91993.2| Hypothetical protein F59F3.4 [Caenorhabditis elegans] ref|NP_509838.2| F59F3.4 [Caenorhabditis elegans] 1.0E-118
blast CAB02674 Hypothetical protein F59F3.4 [Caenorhabditis elegans] emb|CAA91993.2| Hypothetical protein F59F3.4 [Caenorhabditis elegans] ref|NP_509838.2| F59F3.4 [Caenorhabditis elegans] 4.0E-73
blast CAE70769 Hypothetical protein CBG17520 [Caenorhabditis briggsae] 5.0E-56
blast CAE70769 Hypothetical protein CBG17520 [Caenorhabditis briggsae] 1.0E-51
blast CAE70770 Hypothetical protein CBG17521 [Caenorhabditis briggsae] 1.0E-22
blast CAE70770 Hypothetical protein CBG17521 [Caenorhabditis briggsae] 4.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR001873 EMBL-EBI Na+ channel, amiloride-sensitive 1.4E-5
Pfam IPR001873 EMBL-EBI Na+ channel, amiloride-sensitive 7.8E-7
Pfam IPR001873 EMBL-EBI Na+ channel, amiloride-sensitive 3.1E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509838.2 1 87-109
F59F3.4 1 87-109
GENEFINDER00000038688 1 4-26
Sequence
Target Sequence 
>C. ELEGANS:179691_AT
ggagccagttcgttgtttatgggttgcagttgcgtcacactgatggagatgtttgtgttt
ctgttcaaactagtggcaaagtcggcgtgttctcaagaagtcccagagcccgatgatagt
ttttacaatgataaaatcgaattcgaatactcagatcatagaaacaaaaggcgatatgca
atttttgatagagaaacaatggagaagtatttaatatcaaataatagcatagatgtgaaa
agtatcaatcttgacaaacggctatcggtgtttagtgtgaagaaagcgccaaaactcagg
gctctcaaagataaccggaactttgacaaaattgatatttttgatgaaggcatatcagaa
aacgatgccaagaatgaagttgctctcagtcaaaaggatgaatgttctgtggagtatcaa
gatgagaaaatggacactctgggagaaattccgttagaaaatcggagacccctaagacca
cagttacgacgttgctccacagctacttcatttgcatctcatacctctaaaggatcctct
tcacttacagttcgatcttatgctccaaatcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCCAGTTCGTTGTTTATGGGTT 680 521 79 Antisense
ATGGGTTGCAGTTGCGTCACACTGA 336 49 97 Antisense
GTGGCAAAGTCGGCGTGTTCTCAAG 188 491 151 Antisense
AAGTCCCAGAGCCCGATGATAGTTT 99 159 176 Antisense
GAAAGCGCCAAAACTCAGGGCTCTC 540 359 360 Antisense
AGACCACAGTTACGACGTTGCTCCA 157 71 553 Antisense
TTGCTCCACAGCTACTTCATTTGCA 516 699 570 Antisense
CTTCATTTGCATCTCATACCTCTAA 293 221 584 Antisense
ATACCTCTAAAGGATCCTCTTCACT 388 23 599 Antisense
ATCCTCTTCACTTACAGTTCGATCT 627 39 612 Antisense
GTTCGATCTTATGCTCCAAATCAAC 70 443 628 Antisense
Sequence Source Affymetrix Proprietary Database