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[179690_at]

Description W02A2.5 /REP_DB=WormBase Gene ID /WP=CE21235 /TR=Q9XUB4 /GB=CAB05308.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 51      4grp_total > 24      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 41.3
(-3)
A 		144.6
(0.8)
A 		202.4
(3)
A 		185.1
(2.4)
A 		161
B 188.3
(3)
A 		59.1
(-2)
A 		55.9
(-2.1)
A 		32.6
(-3)
A 		156
C 62
(-3)
A 		121.3
(0.1)
A 		114.2
(-0.2)
A 		175.3
(3)
M 		113
avr 97.2
(-3) 		108.3
(-1) 		124.2
(1.8) 		131
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 216
1 2 3 4 5 6 range
A 154.1
(1.3)
P 		52.8
(-3)
A 		195.8
(3)
A 		53.2
(-3)
A 		142.8
(0.8)
A 		59.9
(-2.7)
A 		143
B 39.9
(-1)
A 		69.3
(2.5)
P 		73.2
(3)
A 		50.5
(0.2)
A 		34.5
(-1.7)
A 		23.8
(-3)
A 		49
C 72.8
(-1.6)
A 		95.6
(-0.9)
P 		80.2
(-1.4)
A 		237.5
(3)
A 		71.8
(-1.6)
A 		21.1
(-3)
A 		216
avr 88.9
(1) 		72.6
(-0.2) 		116.4
(3) 		113.7
(2.8) 		83
(0.5) 		34.9
(-3) 		82
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 15
(-3)
A 		31.4
(-0.4)
A 		52.9
(3)
A 		27.1
(-1.1)
A 		38
B 60
(3)
A 		14.6
(-2.1)
A 		13
(-2.3)
A 		6.9
(-3)
A 		53
C 20.5
(-3)
A 		34.9
(1.5)
A 		39.8
(3)
A 		29.6
(-0.2)
M 		19
avr 31.8
(1.5) 		27
(-0.5) 		35.2
(3) 		21.2
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 28.4
(0)
P 		18.8
(-1.9)
A 		42.6
(2.9)
A 		13.5
(-3)
A 		43.1
(3)
A 		14.6
(-2.8)
A 		30
B 13.9
(-0.9)
A 		23.1
(3)
P 		17.8
(0.8)
A 		13.4
(-1.1)
A 		14
(-0.8)
A 		8.9
(-3)
A 		14
C 27
(-0.1)
A 		29.2
(0.3)
P 		20.4
(-1)
A 		47.8
(3)
A 		23.2
(-0.6)
A 		7.1
(-3)
A 		41
avr 23.1
(1.6) 		23.7
(1.9) 		26.9
(3) 		24.9
(2.3) 		26.8
(3) 		10.2
(-3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179690_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8424
Sequence Type Exemplar sequence
Representative Public ID W02A2.5 NCBI
Target Description W02A2.5 /REP_DB=WormBase Gene ID /WP=CE21235 /TR=Q9XUB4 /GB=CAB05308.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028239, NM_070163
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000017648 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13342827:13348544:1 11/11 None
W02A2.5 ENSEMBL cdna:known chromosome:CEL140:IV:13342827:13348544:1 gene:W02A2.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028239 3/11 Cross Hyb Matching Probes None
NM_070163 6/11 Cross Hyb Matching Probes None
SNAP00000017636 6/11 Cross Hyb Matching Probes None
SNAP00000017637 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13342832-13348550(+) 100.0 100.0
Public Domain and Genome References
Ensembl W02A2.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05308 Hypothetical protein W02A2.5 [Caenorhabditis elegans] ref|NP_502564.2| W02A2.5 [Caenorhabditis elegans] 0.0
blast CAE58620 Hypothetical protein CBG01787 [Caenorhabditis briggsae] 0.0
blast CAI91167 Hypothetical protein W02A2.9 [Caenorhabditis elegans] ref|NP_001023410.1| W02A2.9 [Caenorhabditis elegans] 1.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR000612 EMBL-EBI Protein of unknown function UPF0057 1.3E-20
Trans Membrane
ID Number Of Domains Domain Boundaries
W02A2.5 4 145-167,197-219,403-425,526-548
GENEFINDER00000017648 4 145-167,197-219,403-425,526-548
Sequence
Target Sequence 
>C. ELEGANS:179690_AT
ttgctgcttctctaatggtttttgtttttgagatataccactactggcatgttcgtatcc
ttgcccgtcgtgcccgtatgcgtgatccatggaatgtacgtaacctggcacgtattgccc
aaatacatttcacgacacacgagcaatattcggacattgatgttatgcgtctcgttgatg
catttaatgccacttcatcgtcatccgatacctccacattctctactaaccaacaaacca
acatgccaattacctgcaccgatatcccgaaattcatctgtgctcttcttctcccaccaa
ttggtgtttggatggaaaaaggatgcggagccgacttggtcatcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCTGCTTCTCTAATGGTTTTTGT 623 701 1253 Antisense
CACTACTGGCATGTTCGTATCCTTG 169 197 1291 Antisense
TGCCCGTATGCGTGATCCATGGAAT 276 585 1323 Antisense
ACGTAACCTGGCACGTATTGCCCAA 612 91 1350 Antisense
GCGTCTCGTTGATGCATTTAATGCC 311 291 1419 Antisense
ATTTAATGCCACTTCATCGTCATCC 599 15 1434 Antisense
TCCACATTCTCTACTAACCAACAAA 621 587 1465 Antisense
ACCAACATGCCAATTACCTGCACCG 191 85 1489 Antisense
CCTGCACCGATATCCCGAAATTCAT 294 265 1505 Antisense
CCGAAATTCATCTGTGCTCTTCTTC 373 263 1519 Antisense
ATGCGGAGCCGACTTGGTCATCAAT 559 39 1575 Antisense
Sequence Source Affymetrix Proprietary Database