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[179688_at]

Description T13B5.5 /REP_DB=WormBase Gene ID /WP=CE13611 /TR=O17375 /GB=AAB71289.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 29      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 111.6
(1.5)
A 		101.8
(1)
A 		21.2
(-3)
A 		141.2
(3)
A 		120
B 124.4
(3)
P 		78
(-1.4)
A 		61.5
(-3)
A 		68.1
(-2.4)
A 		63
C 100.4
(1)
A 		67.1
(-3)
A 		67.8
(-2.9)
A 		116.5
(3)
A 		49
avr 112.1
(3) 		82.3
(0.1) 		50.2
(-3) 		108.6
(2.7) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 9.2
(-2.4)
A 		9.1
(-2.4)
A 		11.9
(-2.1)
A 		3.5
(-3)
A 		59.4
(3)
A 		37.4
(0.6)
A 		56
B 50.9
(0.1)
A 		43.7
(-0.5)
A 		10.6
(-2.9)
A 		41.9
(-0.6)
A 		91
(3)
P 		9.3
(-3)
A 		82
C 38.5
(-0.7)
A 		6.4
(-2.9)
A 		7.9
(-2.8)
A 		91.9
(3)
A 		75.7
(1.9)
P 		4.9
(-3)
A 		87
avr 32.9
(-0.9) 		19.7
(-2.1) 		10.1
(-3) 		45.8
(0.3) 		75.4
(3) 		17.2
(-2.3) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 40.6
(3)
A 		22.1
(-0.2)
A 		5.5
(-3)
A 		20.7
(-0.4)
A 		35
B 39.7
(3)
P 		19.3
(-1.8)
A 		14.3
(-3)
A 		14.5
(-3)
A 		25
C 33.2
(3)
A 		19.3
(-3)
A 		23.6
(-1.1)
A 		19.6
(-2.9)
A 		14
avr 37.8
(3) 		20.2
(-1.5) 		14.5
(-3) 		18.3
(-2) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 1.7
(-2.7)
A 		3.2
(-2.2)
A 		2.6
(-2.4)
A 		0.9
(-3)
A 		17.9
(3)
A 		9.1
(-0.1)
A 		17
B 17.7
(-0.4)
A 		14.5
(-0.9)
A 		2.6
(-3)
A 		11.1
(-1.5)
A 		37
(3)
P 		3.4
(-2.9)
A 		34
C 14.3
(0.3)
A 		2
(-2.9)
A 		2
(-2.9)
A 		18.5
(1.4)
A 		24.5
(3)
P 		1.6
(-3)
A 		23
avr 11.2
(-0.8) 		6.6
(-2) 		2.4
(-3) 		10.2
(-1.1) 		26.5
(3) 		4.7
(-2.4) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179688_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4339
Sequence Type Exemplar sequence
Representative Public ID T13B5.5 NCBI
Target Description T13B5.5 /REP_DB=WormBase Gene ID /WP=CE13611 /TR=O17375 /GB=AAB71289.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061513(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061513 NCBI Caenorhabditis elegans T13B5.5 (T13B5.5) mRNA, complete cds. 11/11 None
GENEFINDER00000003633 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1108734:1114232:-1 11/11 None
T13B5.5 ENSEMBL cdna:known chromosome:CEL140:II:1108847:1110998:-1 gene:T13B5.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003626 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1108845-1110997(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T13B5.5
Entrez Gene 188467 Entrez gene
SwissProt O17375 EMBL-EBI
WormBase CE13611 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
16042 lipid catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16298 lipase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB71289 Hypothetical protein T13B5.5 [Caenorhabditis elegans] ref|NP_493914.1| T13B5.5 [Caenorhabditis elegans] 1.0E-159
blast AAB71289 Hypothetical protein T13B5.5 [Caenorhabditis elegans] ref|NP_493914.1| T13B5.5 [Caenorhabditis elegans] 1.0E-148
blast AAB71290 Hypothetical protein T13B5.6 [Caenorhabditis elegans] ref|NP_493915.1| T13B5.6 [Caenorhabditis elegans] 1.0E-115
blast AAB71290 Hypothetical protein T13B5.6 [Caenorhabditis elegans] ref|NP_493915.1| T13B5.6 [Caenorhabditis elegans] 1.0E-105
blast AAB71292 Hypothetical protein T13B5.7 [Caenorhabditis elegans] ref|NP_493916.1| T13B5.7 [Caenorhabditis elegans] 1.0E-89
blast AAB71292 Hypothetical protein T13B5.7 [Caenorhabditis elegans] ref|NP_493916.1| T13B5.7 [Caenorhabditis elegans] 4.0E-80
Protein Domains
Database ID Description E-Value
Pfam IPR002918 EMBL-EBI Lipase, class 2 6.4E-76
Pfam IPR002918 EMBL-EBI Lipase, class 2 4.2E-94
Pfam IPR002918 EMBL-EBI Lipase, class 2 5.4E-106
Sequence
Target Sequence 
>C. ELEGANS:179688_AT
ggcattccagcacacacttatgaaccaaatcttgagatgacgtgtgaatatgtgaaacaa
atcagaaaacttattatcgccgtttcaaagttcacgaataatagggttaatattgtggca
tatggaacaggatccccgattgcaagaaaagcggtgattggaggaaactgcgtggatact
aatgaagatctgggagttccactgacggcgtcagttagagcatttgtttctgttagagat
cattcaagttcaaattcaaattcaaaattcatattttctggacaaaacggaggtattctg
tgcgacccgtcaggtgataaacgtgcaacatgtctaaacatggacatcgggctcaactgt
ggatccaagtttataagagacattaatgccatagacaagcgagtagcccttttccacatt
gactccattgtcccgcttctcctccaaaaaaccagctgtggctcagatccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCATTCCAGCACACACTTATGAAC 277 537 319 Antisense
GCACACACTTATGAACCAAATCTTG 542 317 328 Antisense
TTATTATCGCCGTTTCAAAGTTCAC 567 677 389 Antisense
GTGGCATATGGAACAGGATCCCCGA 646 491 433 Antisense
GAACAGGATCCCCGATTGCAAGAAA 540 349 443 Antisense
GGTGATTGGAGGAAACTGCGTGGAT 679 499 471 Antisense
GAGACATTAATGCCATAGACAAGCG 151 391 695 Antisense
TAGACAAGCGAGTAGCCCTTTTCCA 501 649 710 Antisense
TTTTCCACATTGACTCCATTGTCCC 8 677 728 Antisense
CGCTTCTCCTCCAAAAAACCAGCTG 85 255 752 Antisense
AAAAACCAGCTGTGGCTCAGATCCC 145 129 765 Antisense
Sequence Source Affymetrix Proprietary Database