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[179686_at]

Description C38C6.6 /REP_DB=WormBase Gene ID /WP=CE15698 /TR=O45302 /GB=CAB07566.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      6grp_highest_nonorm > 53      6grp_total > 82      4grp_total > 57      6grp_cgc > 74      6grp_high1_sub > 02_03_04_05      6grp_cgc_sub > 02_03_04_05      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2023
1 2 3 4 range
A 42.2
(-3)
A 		1732.4
(2.9)
P 		1772.5
(3)
P 		52.5
(-3)
A 		1730
B 56
(-2.9)
A 		1713.1
(2)
P 		2045.7
(3)
P 		33.9
(-3)
A 		2012
C 23.1
(-3)
A 		1716.4
(2.5)
P 		1882
(3)
P 		43.8
(-2.9)
A 		1859
avr 40.4
(-3) 		1720.6
(2.4) 		1900.1
(3) 		43.4
(-3) 		1860

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 958
1 2 3 4 5 6 range
A 386.3
(-3)
P 		1207.1
(3)
P 		842.5
(0.3)
P 		992.9
(1.4)
P 		1213.6
(3)
P 		704.5
(-0.7)
P 		827
B 466.7
(-3)
P 		1103.2
(1.6)
P 		1134.5
(1.8)
P 		1305.7
(3)
P 		1086.1
(1.4)
P 		700.9
(-1.3)
P 		839
C 348
(-3)
P 		1108.2
(2.4)
P 		952.3
(1.3)
P 		1190.4
(3)
P 		1162.3
(2.8)
P 		691
(-0.6)
P 		842
avr 400.3
(-3) 		1139.5
(2.8) 		976.4
(1.5) 		1163
(3) 		1154
(2.9) 		698.8
(-0.7) 		763
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 649
1 2 3 4 range
A 15.3
(-2.9)
A 		376.1
(1.9)
P 		463.4
(3)
P 		7.7
(-3)
A 		456
B 17.9
(-2.9)
A 		423.1
(2.3)
P 		474
(3)
P 		7.2
(-3)
A 		467
C 7.7
(-3)
A 		493.5
(1.5)
P 		655.9
(3)
P 		7.4
(-3)
A 		649
avr 13.6
(-2.9) 		430.9
(1.9) 		531.1
(3) 		7.4
(-3) 		524

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 370
1 2 3 4 5 6 range
A 71.2
(-3)
P 		429.3
(3)
P 		183.5
(-1.1)
P 		251.8
(0)
P 		366.2
(1.9)
P 		171.5
(-1.3)
P 		358
B 162.4
(-3)
P 		367.2
(1.4)
P 		275.5
(-0.6)
P 		345.8
(0.9)
P 		441.3
(3)
P 		261.4
(-0.9)
P 		279
C 129
(-3)
P 		338.2
(2.1)
P 		242.4
(-0.2)
P 		239.4
(-0.3)
P 		376.1
(3)
P 		231.3
(-0.5)
P 		247
avr 120.9
(-3) 		378.2
(2.6) 		233.8
(-0.5) 		279
(0.5) 		394.5
(3) 		221.4
(-0.8) 		274
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179686_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2895
Sequence Type Exemplar sequence
Representative Public ID C38C6.6 NCBI
Target Description C38C6.6 /REP_DB=WormBase Gene ID /WP=CE15698 /TR=O45302 /GB=CAB07566.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064638(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064638 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-297) (tag-297) mRNA, complete cds. 11/11 None
SNAP00000016878 ENSEMBL cdna:SNAP chromosome:CEL140:II:14628217:14631828:1 11/11 None
GENEFINDER00000016890 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14628541:14629890:1 11/11 None
C38C6.6.3 ENSEMBL cdna:known chromosome:CEL140:II:14627516:14629995:1 gene:C38C6.6 11/11 None
C38C6.6.1 ENSEMBL cdna:known chromosome:CEL140:II:14627519:14630000:1 gene:C38C6.6 11/11 None
C38C6.6.2 ENSEMBL cdna:known chromosome:CEL140:II:14627521:14630000:1 gene:C38C6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14627517-14629887(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-297
Ensembl C38C6.6
Entrez Gene 175123 Entrez gene
SwissProt O45302 EMBL-EBI
WormBase CE15698 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07587 Hypothetical protein C38C6.6 [Caenorhabditis elegans] emb|CAB07566.1| Hypothetical protein C38C6.6 [Caenorhabditis elegans] ref|NP_497039.1| Temporarily Assigned Gene name family member (tag-297) [Caenorhabditis elegans] 0.0
blast CAE65896 Hypothetical protein CBG11063 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:179686_AT
gagggaaatctctgcagagccaccggcgaacgtacataccgattaactgtcaagctgtgc
ccaccaccagaggatccaaacttcacaatgtgcaccgcattttctaaatctgtttggcag
aaagactattggcagaagcaaggagcagtagatgtctggatgaagttctacgagcgtggg
caaactagaccggagctcgagaaggaattcttcgcccaaatcgacaacccgcttctggga
aaagctttcaaatttgccatcattggagaatggcttgctgccaactcacttgaccaggga
tcctacaccccaaccaactccgaactcttggaatactgggtctcgaagagagatccagat
cgtctacttgcttgccagcacgctgttgtcgattatgacattgagggagctaaggtcaag
accaacttgctctttgaggcagccactact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGGAAATCTCTGCAGAGCCACCG 117 403 1219 Antisense
CAGAGCCACCGGCGAACGTACATAC 587 203 1233 Antisense
CGATTAACTGTCAAGCTGTGCCCAC 650 247 1258 Antisense
GTGCACCGCATTTTCTAAATCTGTT 364 481 1308 Antisense
GCGTGGGCAAACTAGACCGGAGCTC 304 293 1392 Antisense
GAGAATGGCTTGCTGCCAACTCACT 604 391 1484 Antisense
AACTCACTTGACCAGGGATCCTACA 700 139 1501 Antisense
GAACTCTTGGAATACTGGGTCTCGA 206 349 1540 Antisense
AGAGATCCAGATCGTCTACTTGCTT 497 67 1567 Antisense
GCCAGCACGCTGTTGTCGATTATGA 387 279 1592 Antisense
CTTGCTCTTTGAGGCAGCCACTACT 352 217 1644 Antisense
Sequence Source Affymetrix Proprietary Database