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[179685_at]

Description T12G3.7 /REP_DB=WormBase Gene ID /WP=CE18257 /TR=O62430 /GB=CAA19510.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 98      4grp_highest_8_8 > 37      4grp_high_8_8 > 01      6grp_highest_nonorm > 91      6grp_total > 99      4grp_total > 07      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 162
1 2 3 4 range
A 244.7
(1.7)
P 		248.6
(2.4)
P 		217.6
(-3)
P 		252.2
(3)
P 		35
B 285.2
(2.5)
P 		180.8
(-3)
P 		294.2
(3)
P 		186.8
(-2.7)
P 		113
C 256
(-0.8)
P 		233.3
(-1.8)
P 		205
(-3)
P 		342.6
(3)
P 		138
avr 262
(3) 		220.9
(-3) 		238.9
(-0.4) 		260.5
(2.8) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 215.9
(-0)
P 		196.4
(-0.7)
P 		227
(0.3)
P 		128.8
(-3)
P 		304.7
(3)
P 		207.6
(-0.3)
P 		176
B 253.6
(0.8)
P 		196
(-3)
P 		288.1
(3)
P 		279.1
(2.4)
P 		250.5
(0.6)
P 		280
(2.5)
P 		92
C 161.7
(-3)
P 		227.9
(-0.4)
P 		204.9
(-1.3)
P 		269.1
(1.3)
P 		253.1
(0.6)
P 		313
(3)
P 		151
avr 210.4
(-2.7) 		206.8
(-3) 		240
(0.2) 		225.7
(-1.2) 		269.4
(3) 		266.9
(2.8) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 89.1
(3)
P 		54
(-1)
P 		56.9
(-0.7)
P 		36.9
(-3)
P 		52
B 90.9
(3)
P 		44.7
(-2.4)
P 		68.2
(0.3)
P 		39.8
(-3)
P 		51
C 84.8
(3)
P 		67.1
(-0.9)
P 		71.5
(0)
P 		57.8
(-3)
P 		27
avr 88.3
(3) 		55.3
(-1.6) 		65.5
(-0.1) 		44.8
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 39.8
(-2.3)
P 		69.9
(0.8)
P 		49.4
(-1.3)
P 		32.7
(-3)
P 		92
(3)
P 		50.5
(-1.2)
P 		59
B 88.3
(0.5)
P 		65.2
(-3)
P 		70
(-2.3)
P 		73.9
(-1.7)
P 		101.8
(2.6)
P 		104.4
(3)
P 		39
C 59.9
(-2.1)
P 		69.5
(-1)
P 		52.1
(-3)
P 		54.1
(-2.8)
P 		81.9
(0.4)
P 		104.8
(3)
P 		53
avr 62.7
(-1.6) 		68.2
(-0.7) 		57.2
(-2.4) 		53.6
(-3) 		91.9
(3) 		86.6
(2.2) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179685_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9379
Sequence Type Exemplar sequence
Representative Public ID T12G3.7 NCBI
Target Description T12G3.7 /REP_DB=WormBase Gene ID /WP=CE18257 /TR=O62430 /GB=CAA19510.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069876(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069876 NCBI Caenorhabditis elegans T12G3.7 (T12G3.7) mRNA, complete cds. 11/11 None
SNAP00000042344 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12027314:12029135:-1 10/11 None
GENEFINDER00000042359 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12027314:12029135:-1 10/11 None
T12G3.7 ENSEMBL cdna:known chromosome:CEL140:IV:12026913:12029448:-1 gene:T12G3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12027151-12029454(-) 90.99 100.0
Public Domain and Genome References
Gene Title
Ensembl T12G3.7
Entrez Gene 178137 Entrez gene
SwissProt O62430 EMBL-EBI
WormBase CE18257 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92986 Hypothetical protein T12G3.7 [Caenorhabditis elegans] emb|CAA19510.1| Hypothetical protein T12G3.7 [Caenorhabditis elegans] ref|NP_502277.1| T12G3.7 [Caenorhabditis elegans] 1.0E-116
blast CAA92986 Hypothetical protein T12G3.7 [Caenorhabditis elegans] emb|CAA19510.1| Hypothetical protein T12G3.7 [Caenorhabditis elegans] ref|NP_502277.1| T12G3.7 [Caenorhabditis elegans] 8.0E-94
blast CAE62163 Hypothetical protein CBG06210 [Caenorhabditis briggsae] 2.0E-78
blast CAE62163 Hypothetical protein CBG06210 [Caenorhabditis briggsae] 1.0E-75
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502277.1 1 293-315
T12G3.7 1 293-315
SNAP00000042344 1 264-283
GENEFINDER00000042359 1 264-283
Sequence
Target Sequence 
>C. ELEGANS:179685_AT
agaaacaattgccccttttgcacagaaagcaccaaaagaagtagaagatgcgaaagaaga
ggaaaaagaaaatgcagctccagaatttgaaccaaaacaagaagtggaaggtggaaaagg
ggaagaagatccagatgcgaacgttgacaaaccagctgtggtagatcctccaaaagatga
agctgatggtgcagccaaagaggatcgagagactcctgcagttggagcagaaggattaca
tgaagcagttgaagaagccagaggaaatcccgctccaggtgtacctgttgctgagaaaaa
gaaagattcagctgatgaggagcagacactggaagctggtcccgtcgctcgaccacatag
gcatgattcatctaacgaattccaatcatttccacgtattcgtggagccgaggaagatgg
aacaggattcatgtcatttttctttgtcgcctctttcctgatcgtcgccatctacctatt
acagcataataagaaaaagattctcggtctgatgttcgaaggtcgaaccggaagagctgg
atctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAACAATTGCCCCTTTTGCACAG 244 73 471 Antisense
GATGCGAACGTTGACAAACCAGCTG 201 415 604 Antisense
AACCAGCTGTGGTAGATCCTCCAAA 362 147 620 Antisense
GGATCGAGAGACTCCTGCAGTTGGA 84 513 672 Antisense
AGAAGCCAGAGGAAATCCCGCTCCA 70 75 723 Antisense
CCGCTCCAGGTGTACCTGTTGCTGA 212 263 740 Antisense
AGCAGACACTGGAAGCTGGTCCCGT 26 77 791 Antisense
TCGCTCGACCACATAGGCATGATTC 371 599 815 Antisense
GGATTCATGTCATTTTTCTTTGTCG 373 509 895 Antisense
TCGCCATCTACCTATTACAGCATAA 338 599 935 Antisense
GGTCGAACCGGAAGAGCTGGATCTC 312 499 991 Antisense
Sequence Source Affymetrix Proprietary Database