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[179684_at] 7TM receptor, sre family

Description W07G1.6 /REP_DB=WormBase Gene ID /WP=CE24040 /TR=Q9XUJ9 /GB=CAB04938.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 13      4grp_total > 02      6grp_cgc > 61      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 67
(-0.5)
A 		43.9
(-3)
A 		73.4
(0.2)
A 		99.6
(3)
P 		56
B 59.6
(-0.9)
A 		47.6
(-3)
A 		64.8
(-0)
A 		82.3
(3)
A 		35
C 53.2
(-1.9)
A 		90.5
(3)
A 		44.5
(-3)
A 		76
(1.1)
A 		46
avr 59.9
(-3) 		60.7
(-2.8) 		60.9
(-2.8) 		86
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 102.5
(3)
A 		59.8
(-3)
P 		70.3
(-1.5)
A 		84.9
(0.5)
A 		80.8
(-0)
A 		68
(-1.8)
M 		43
B 53.2
(-0.6)
A 		85
(3)
M 		43.7
(-1.6)
A 		38.6
(-2.2)
A 		43.5
(-1.6)
A 		31.3
(-3)
A 		54
C 83.3
(1.9)
M 		97.7
(3)
A 		94.9
(2.8)
A 		83
(1.8)
A 		36.3
(-1.8)
A 		21.6
(-3)
A 		76
avr 79.7
(2.8) 		80.8
(3) 		69.6
(1.3) 		68.8
(1.2) 		53.5
(-1) 		40.3
(-3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 24.4
(3)
A 		9.5
(-3)
A 		19.2
(0.9)
A 		14.6
(-0.9)
P 		15
B 19
(3)
A 		11.8
(-3)
A 		15
(-0.3)
A 		17.5
(1.8)
A 		7
C 17.6
(-0.8)
A 		26
(3)
A 		15.5
(-1.8)
A 		12.8
(-3)
A 		13
avr 20.3
(3) 		15.8
(-2.1) 		16.6
(-1.2) 		15
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 18.9
(-0.6)
A 		21.3
(1)
P 		15.3
(-3)
A 		21.5
(1.1)
A 		24.4
(3)
A 		16.5
(-2.2)
M 		9
B 18.5
(-0.2)
A 		28.3
(3)
M 		10.6
(-2.9)
A 		10.2
(-3)
A 		17.7
(-0.5)
A 		11.7
(-2.5)
A 		18
C 30.9
(3)
M 		29.8
(2.7)
A 		24.1
(1.3)
A 		16.7
(-0.6)
A 		11.7
(-1.9)
A 		7.2
(-3)
A 		24
avr 22.8
(1.5) 		26.5
(3) 		16.7
(-1) 		16.1
(-1.2) 		17.9
(-0.5) 		11.8
(-3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179684_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2878
Sequence Type Exemplar sequence
Representative Public ID W07G1.6 NCBI
Target Description W07G1.6 /REP_DB=WormBase Gene ID /WP=CE24040 /TR=Q9XUJ9 /GB=CAB04938.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064522(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064522 NCBI Caenorhabditis elegans Serpentine Receptor, class E (epsilon) family member (sre-43) (sre-43) mRNA, complete cds. 11/11 None
GENEFINDER00000025683 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13964783:13968549:-1 11/11 None
W07G1.6 ENSEMBL cdna:known chromosome:CEL140:II:13966426:13968971:-1 gene:W07G1.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025663 1/11 Cross Hyb Matching Probes None
SNAP00000025664 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13966422-13968968(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, sre family
Gene Symbol sre-43
Ensembl W07G1.6
Entrez Gene 189282 Entrez gene
SwissProt Q9XUJ9 EMBL-EBI
WormBase CE24040 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04938 Hypothetical protein W07G1.6 [Caenorhabditis elegans] ref|NP_496923.1| Serpentine Receptor, class E (epsilon) family member (sre-43) [Caenorhabditis elegans] 0.0
blast CAE73314 Hypothetical protein CBG20741 [Caenorhabditis briggsae] 1.0E-152
blast CAB04938 Hypothetical protein W07G1.6 [Caenorhabditis elegans] ref|NP_496923.1| Serpentine Receptor, class E (epsilon) family member (sre-43) [Caenorhabditis elegans] 1.0E-140
blast CAE73314 Hypothetical protein CBG20741 [Caenorhabditis briggsae] 1.0E-98
blast CAB04939 Hypothetical protein W07G1.7 [Caenorhabditis elegans] ref|NP_496922.1| W07G1.7 [Caenorhabditis elegans] 1.0E-74
blast NP_494832 F10G7.7 [Caenorhabditis elegans] gb|AAA81123.3| Hypothetical protein F10G7.7 [Caenorhabditis elegans] 5.0E-46
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.0E-126
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 5.8E-102
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496923.1 7 28-50,63-85,125-147,168-190,195-217,253-275,285-307
W07G1.6 7 28-50,63-85,125-147,168-190,195-217,253-275,285-307
GENEFINDER00000025683 5 30-52,73-95,100-122,158-180,190-212
Sequence
Target Sequence 
>C. ELEGANS:179684_AT
gcgtcgttctttttcagcgattacgagaaaaagcaacgcagctacctgggctacactcta
ctcgccacatctcaatgctgttgtattcaaggatccattctcgtgttcttctactttttc
tccctgaagcctgtgcttatcattagcaccatcttattaagctgtgtaattttgacattt
ttcctccttctccagtacaacacttccctgcggaaccggctggacttaaaacagatcgaa
ctttcgtacagccttgccgccagattccaggcggctgaaaacgcgcggtccctgaaactc
gcggttttcgtgttcgctgtgatttgttgtatatttgtgttggcgatttctactatgggt
attctatttttgcaattgctgccggattattatgatgtggcgattatgaccattttcgag
tgccttgtttctttaaaccctctcttcattgtcccggctgcaatgttctcggtgcccgag
tggaaaatcgccttctacaagcacatgccttttgtcgggcgccgacacagacaccgtaat
cccgatagtaaaataatggaccacgacttgcgagtcagcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGTCGTTCTTTTTCAGCGATTACG 86 291 466 Antisense
AAAAGCAACGCAGCTACCTGGGCTA 2 131 494 Antisense
CTCGCCACATCTCAATGCTGTTGTA 627 233 526 Antisense
TCAAGGATCCATTCTCGTGTTCTTC 178 633 552 Antisense
TCTCCCTGAAGCCTGTGCTTATCAT 473 611 584 Antisense
TCCAGGCGGCTGAAAACGCGCGGTC 433 587 731 Antisense
TGAAACTCGCGGTTTTCGTGTTCGC 229 573 758 Antisense
TATGACCATTTTCGAGTGCCTTGTT 372 657 870 Antisense
GGTGCCCGAGTGGAAAATCGCCTTC 120 501 936 Antisense
ACACAGACACCGTAATCCCGATAGT 481 109 990 Antisense
TGGACCACGACTTGCGAGTCAGCAT 487 547 1022 Antisense
Sequence Source Affymetrix Proprietary Database