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[179683_at]

Description C44B9.3 /REP_DB=WormBase Gene ID /WP=CE05405 /TR=Q18604 /GB=CAA97780.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 23      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 2.3
(-3)
A 		8.2
(1.1)
A 		7
(0.3)
A 		10.9
(3)
A 		9
B 35.1
(3)
A 		3.6
(-3)
A 		13.9
(-1)
A 		19.3
(-0)
A 		32
C 2.7
(-3)
A 		7.7
(3)
A 		3
(-2.6)
A 		5
(-0.2)
A 		5
avr 13.4
(3) 		6.5
(-3) 		8
(-1.7) 		11.7
(1.5) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 533
1 2 3 4 5 6 range
A 3.1
(-3)
A 		6.8
(-2.9)
A 		47
(-2.4)
A 		61.2
(-2.2)
A 		274.4
(0.8)
P 		436.2
(3)
P 		433
B 5.7
(-3)
A 		3.9
(-3)
A 		6.6
(-3)
A 		65.9
(-2.2)
A 		261.3
(0.2)
P 		489.2
(3)
P 		485
C 5.8
(-3)
A 		19.4
(-2.8)
A 		10.3
(-2.9)
A 		73.5
(-2.2)
A 		276.5
(0.1)
P 		536.5
(3)
P 		531
avr 4.9
(-3) 		10
(-2.9) 		21.3
(-2.8) 		66.9
(-2.2) 		270.7
(0.3) 		487.3
(3) 		482
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 0.8
(-3)
A 		1.8
(3)
A 		1.8
(3)
A 		1.6
(1.8)
A 		1
B 11.2
(3)
A 		0.9
(-3)
A 		3.2
(-1.7)
A 		4.1
(-1.1)
A 		10
C 0.9
(-2.6)
A 		2.2
(3)
A 		1.1
(-1.7)
A 		0.8
(-3)
A 		1
avr 4.3
(3) 		1.6
(-3) 		2
(-2.1) 		2.2
(-1.7) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 182
1 2 3 4 5 6 range
A 0.6
(-3)
A 		2.4
(-2.9)
A 		10.2
(-2.5)
A 		15.5
(-2.2)
A 		82.8
(1.7)
P 		106.2
(3)
P 		106
B 2
(-3)
A 		1.3
(-3)
A 		1.6
(-3)
A 		17.5
(-2.5)
A 		106.2
(0.5)
P 		182.4
(3)
P 		181
C 2.2
(-3)
A 		5.9
(-2.9)
A 		2.6
(-3)
A 		14.8
(-2.6)
A 		89.5
(-0)
P 		179.6
(3)
P 		177
avr 1.6
(-3) 		3.2
(-2.9) 		4.8
(-2.9) 		15.9
(-2.4) 		92.8
(0.5) 		156.1
(3) 		155
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179683_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6511
Sequence Type Exemplar sequence
Representative Public ID C44B9.3 NCBI
Target Description C44B9.3 /REP_DB=WormBase Gene ID /WP=CE05405 /TR=Q18604 /GB=CAA97780.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066995(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066995 NCBI Caenorhabditis elegans C44B9.3 (C44B9.3) mRNA, complete cds. 11/11 None
SNAP00000022574 ENSEMBL cdna:SNAP chromosome:CEL140:III:10869515:10880041:-1 11/11 None
GENEFINDER00000022578 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10878208:10880041:-1 11/11 None
C44B9.3 ENSEMBL cdna:known chromosome:CEL140:III:10878259:10879972:-1 gene:C44B9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10878254-10879968(-) 99.42 100.0
Public Domain and Genome References
Gene Title
Ensembl C44B9.3
Entrez Gene 183435 Entrez gene
SwissProt Q18604 EMBL-EBI
WormBase CE05405 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA97780 Hypothetical protein C44B9.3 [Caenorhabditis elegans] ref|NP_499396.1| C44B9.3 [Caenorhabditis elegans] 1.0E-141
blast CAA97780 Hypothetical protein C44B9.3 [Caenorhabditis elegans] ref|NP_499396.1| C44B9.3 [Caenorhabditis elegans] 1.0E-140
blast CAA97780 Hypothetical protein C44B9.3 [Caenorhabditis elegans] ref|NP_499396.1| C44B9.3 [Caenorhabditis elegans] 1.0E-137
blast CAE71387 Hypothetical protein CBG18294 [Caenorhabditis briggsae] 1.0E-100
blast CAE71387 Hypothetical protein CBG18294 [Caenorhabditis briggsae] 3.0E-99
blast CAE71387 Hypothetical protein CBG18294 [Caenorhabditis briggsae] 4.0E-99
blast CAA83591 Hypothetical protein C05B5.4 [Caenorhabditis elegans] ref|NP_499216.1| C05B5.4 [Caenorhabditis elegans] sp|P34292|YKO4_CAEEL Hypothetical protein C05B5.4 in chromosome III 3.0E-13
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499396.1 1 178-200
C44B9.3 1 178-200
SNAP00000022574 2 5-27,201-223
GENEFINDER00000022578 2 5-27,201-223
Sequence
Target Sequence 
>C. ELEGANS:179683_AT
agaacactgcagatccaaggtcaatgcttcatgtcaaccgtcaaagttcaagcatccaat
acagtatgcccatggtgtgtagatgattcacaaacaactactacaactacagtaacccca
gcaccaccatccaccacgttttctccatttttcggaacttcgaacaacacctcattgctc
atcggaatgctcattcttgcgtttttctctttgctggctctcacatcgactaccgtactc
ctctgtgtgtatattagtgatcgaaagaagcctgagttctttgatatgccattgccacag
gcaaatagtactgtacttggcgggaggagtagcgacacgggcctcttcaccacaaaatca
tcatcagaacgttggacagaatacggatgtgaaccatggtcatcattccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAACACTGCAGATCCAAGGTCAAT 460 73 355 Antisense
GTCAATGCTTCATGTCAACCGTCAA 644 463 374 Antisense
ACCGTCAAAGTTCAAGCATCCAATA 592 87 391 Antisense
GAACTTCGAACAACACCTCATTGCT 596 349 509 Antisense
ACCTCATTGCTCATCGGAATGCTCA 660 87 523 Antisense
AATGCTCATTCTTGCGTTTTTCTCT 611 165 540 Antisense
TACCGTACTCCTCTGTGTGTATATT 662 649 585 Antisense
GTTCTTTGATATGCCATTGCCACAG 669 443 630 Antisense
TGGCGGGAGGAGTAGCGACACGGGC 434 541 672 Antisense
CCTCTTCACCACAAAATCATCATCA 635 267 696 Antisense
ATGTGAACCATGGTCATCATTCCAA 219 49 741 Antisense
Sequence Source Affymetrix Proprietary Database