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[179682_at]

Description C31H5.6 /REP_DB=WormBase Gene ID /WP=CE17486 /TR=O62086 /GB=CAB07846.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 0      6grp_total > 37      4grp_total > 54      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2791
1 2 3 4 range
A 3542
(3)
P 		1823.9
(-0.7)
P 		1777.4
(-0.8)
P 		785.2
(-3)
P 		2757
B 3576.1
(3)
P 		2056.3
(-0.4)
P 		1612.2
(-1.4)
P 		912
(-3)
P 		2664
C 3474.2
(3)
P 		1812.7
(-0.8)
P 		1891.4
(-0.6)
P 		858.2
(-3)
P 		2616
avr 3530.8
(3) 		1897.6
(-0.7) 		1760.3
(-1) 		851.8
(-3) 		2679

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1650
1 2 3 4 5 6 range
A 2531.9
(3)
P 		1740.3
(-0.6)
P 		1544.3
(-1.5)
P 		1283.1
(-2.7)
P 		1225.2
(-3)
P 		1661.7
(-1)
P 		1307
B 2570.4
(3)
P 		2099.4
(0.8)
P 		1529.9
(-1.8)
P 		1437.9
(-2.2)
P 		1265.7
(-3)
P 		1889.5
(-0.1)
P 		1305
C 1906.9
(1.9)
P 		2130.9
(3)
P 		1370.5
(-0.8)
P 		1435.4
(-0.4)
P 		920.2
(-3)
P 		1902.4
(1.9)
P 		1211
avr 2336.4
(3) 		1990.2
(1.3) 		1481.6
(-1.3) 		1385.5
(-1.8) 		1137
(-3) 		1817.9
(0.4) 		1199
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1175
1 2 3 4 range
A 1289.7
(3)
P 		395.9
(-1.6)
P 		464.6
(-1.2)
P 		114.9
(-3)
P 		1175
B 1140.4
(3)
P 		507.9
(-1)
P 		373.6
(-1.9)
P 		194.4
(-3)
P 		946
C 1150.1
(3)
P 		521.2
(-0.8)
P 		659.2
(0.1)
P 		144.7
(-3)
P 		1005
avr 1193.4
(3) 		475
(-1.1) 		499.1
(-1) 		151.3
(-3) 		1042

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 606
1 2 3 4 5 6 range
A 466.7
(-0.1)
P 		618.9
(3)
P 		336.3
(-2.8)
P 		325.4
(-3)
P 		369.7
(-2.1)
P 		404.6
(-1.4)
P 		294
B 894.4
(3)
P 		698.8
(0.8)
P 		371.5
(-3)
P 		380.9
(-2.9)
P 		514.2
(-1.4)
P 		704.6
(0.8)
P 		523
C 706.8
(3)
P 		650.2
(2.2)
P 		348.8
(-2.1)
P 		288.7
(-3)
P 		297.8
(-2.9)
P 		636.8
(2)
P 		418
avr 689.3
(3) 		656
(2.4) 		352.2
(-2.7) 		331.7
(-3) 		393.9
(-2) 		582
(1.2) 		358
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179682_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2134
Sequence Type Exemplar sequence
Representative Public ID C31H5.6 NCBI
Target Description C31H5.6 /REP_DB=WormBase Gene ID /WP=CE17486 /TR=O62086 /GB=CAB07846.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060030(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060030 NCBI Caenorhabditis elegans C31H5.6 (C31H5.6) mRNA, complete cds. 11/11 None
SNAP00000044189 ENSEMBL cdna:SNAP chromosome:CEL140:I:9051544:9054695:-1 11/11 None
GENEFINDER00000044195 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9051544:9054695:-1 11/11 None
C31H5.6 ENSEMBL cdna:known chromosome:CEL140:I:9051467:9055013:-1 gene:C31H5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9051474-9054668(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C31H5.6
Entrez Gene 172725 Entrez gene
SwissProt O62086 EMBL-EBI
WormBase CE17486 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.4748.1.S1_AT similar to bile acid Coenzyme A: amino acid N-acyltransferase cfa
HG-U133_PLUS_2:206913_AT bile acid Coenzyme A: amino acid N-acyltransferase (glycine N-choloyltransferase) hs
HG-U133A:206913_AT bile acid Coenzyme A: amino acid N-acyltransferase (glycine N-choloyltransferase) hs
HG-FOCUS:206913_AT bile acid Coenzyme A: amino acid N-acyltransferase (glycine N-choloyltransferase) hs
HG-U133A_2:206913_AT bile acid Coenzyme A: amino acid N-acyltransferase (glycine N-choloyltransferase) hs
HU35KSUBC:RC_R98624_AT bile acid Coenzyme A: amino acid N-acyltransferase (glycine N-choloyltransferase) hs
HUGENEFL:L34081_AT bile acid Coenzyme A: amino acid N-acyltransferase (glycine N-choloyltransferase) hs
U133_X3P:G4502350_3P_AT bile acid Coenzyme A: amino acid N-acyltransferase (glycine N-choloyltransferase) hs
HG-U95AV2:36384_AT bile acid Coenzyme A: amino acid N-acyltransferase (glycine N-choloyltransferase) hs
HG-U95C:61000_AT bile acid Coenzyme A: amino acid N-acyltransferase (glycine N-choloyltransferase) hs
MOUSE430_2:1419001_AT bile acid-Coenzyme A: amino acid N-acyltransferase mm
MOE430A:1419001_AT bile acid-Coenzyme A: amino acid N-acyltransferase mm
MOUSE430A_2:1419001_AT bile acid-Coenzyme A: amino acid N-acyltransferase mm
MU11KSUBB:U95215_S_AT bile acid-Coenzyme A: amino acid N-acyltransferase mm
MG-U74AV2:104273_AT bile acid-Coenzyme A: amino acid N-acyltransferase mm
MOE430A:1419002_S_AT bile acid-Coenzyme A: amino acid N-acyltransferase mm
MOUSE430A_2:1419002_S_AT bile acid-Coenzyme A: amino acid N-acyltransferase mm
MOUSE430_2:1419002_S_AT bile acid-Coenzyme A: amino acid N-acyltransferase mm
MU19KSUBC:TC38251_AT Bile acid-Coenzyme A: amino acid N-acyltransferase, mRNA (cDNA clone MGC:13905 IMAGE:4162730) mm
RG-U34A:D43964_AT bile acid-Coenzyme A: amino acid N-acyltransferase rn
RAE230A:1387508_AT bile acid-Coenzyme A: amino acid N-acyltransferase rn
RAT230_2:1387508_AT bile acid-Coenzyme A: amino acid N-acyltransferase rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6629 lipid metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16290 palmitoyl-CoA hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07846 Hypothetical protein C31H5.6 [Caenorhabditis elegans] ref|NP_492431.1| C31H5.6 [Caenorhabditis elegans] 0.0
blast CAE67026 Hypothetical protein CBG12427 [Caenorhabditis briggsae] 0.0
blast NP_491047 W03D8.8 [Caenorhabditis elegans] gb|AAK21494.2| Hypothetical protein W03D8.8 [Caenorhabditis elegans] 1.0E-155
Protein Domains
Database ID Description E-Value
Pfam IPR006862 EMBL-EBI Acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase 4.6E-106
Pfam IPR006862 EMBL-EBI Acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase 4.6E-106
Sequence
Target Sequence 
>C. ELEGANS:179682_AT
gtagtctctattaacggtccacatgctcaatgcagttattcattgctcaaagagcacgga
aaacaaatgattgttccagaacttgacgattcaaagttgtatttcttgaatacaattcta
gtaacagctccatgcttcaagacattgactccaattttgacagaagagaattcaattcca
tggcattggattccgaaggaaaccgcgttcaggcttattggctccgtcgatgatctatgt
gctccgtcaattcactccaatttgcatattcaaaagaaattgcaagaaactggacactac
gttgagttggaattagtaaatggcggtcatatcatggaacctccttacttcccacatcac
gatattgtatatgccaaatttcaaggattctattgtggatacggtggagaaatagtgctt
catgcaaaatcacaggaaagaacatgggcaaatacaattaactttttcaaaagaaaactt
ggaagtccaccaccaatgcctgattggactcgtcttttcattgttaatgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAGTCTCTATTAACGGTCCACATG 40 457 787 Antisense
TCCACATGCTCAATGCAGTTATTCA 625 585 804 Antisense
ATTGTTCCAGAACTTGACGATTCAA 351 3 856 Antisense
GTAACAGCTCCATGCTTCAAGACAT 677 461 907 Antisense
GAAACCGCGTTCAGGCTTATTGGCT 405 357 985 Antisense
TTGGCTCCGTCGATGATCTATGTGC 353 709 1004 Antisense
ATCTATGTGCTCCGTCAATTCACTC 131 33 1019 Antisense
ATATCATGGAACCTCCTTACTTCCC 344 19 1115 Antisense
AACTTGGAAGTCCACCACCAATGCC 353 139 1262 Antisense
CCACCAATGCCTGATTGGACTCGTC 649 273 1276 Antisense
GGACTCGTCTTTTCATTGTTAATGC 339 523 1292 Antisense
Sequence Source Affymetrix Proprietary Database