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[179681_at]

Description R08A2.4 /REP_DB=WormBase Gene ID /WP=CE23905 /TR=Q9U392 /GB=CAB57905.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 33
(-1.2)
A 		33.1
(-1.2)
A 		3.9
(-3)
A 		99.1
(3)
A 		95
B 27.6
(-2.1)
A 		31.5
(-1.4)
A 		22.2
(-3)
A 		57.2
(3)
A 		35
C 34.7
(-3)
A 		46.3
(-1.9)
A 		36
(-2.9)
A 		98.1
(3)
A 		63
avr 31.8
(-2) 		37
(-1.5) 		20.7
(-3) 		84.8
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 17.1
(-2.1)
A 		18.7
(-1.9)
A 		51
(1.8)
A 		40.2
(0.6)
A 		61
(3)
A 		9.7
(-3)
A 		51
B 33.4
(-0.8)
A 		63
(3)
A 		23.7
(-2.1)
A 		36
(-0.5)
A 		16.4
(-3)
A 		32.6
(-0.9)
A 		47
C 24.4
(-1.3)
A 		74.1
(3)
A 		64.7
(2.2)
A 		4
(-3)
A 		42.1
(0.3)
A 		6.3
(-2.8)
A 		70
avr 25
(-1.5) 		51.9
(3) 		46.5
(2.1) 		26.7
(-1.2) 		39.8
(1) 		16.2
(-3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 12
(1.9)
A 		7.2
(-0.2)
A 		1
(-3)
A 		14.5
(3)
A 		14
B 8.8
(0.1)
A 		7.8
(-0.7)
A 		5.1
(-3)
A 		12.2
(3)
A 		7
C 11.5
(-3)
A 		13.3
(-0.8)
A 		12.6
(-1.7)
A 		16.5
(3)
A 		5
avr 10.8
(0.4) 		9.4
(-0.7) 		6.2
(-3) 		14.4
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 3.2
(-2.7)
A 		6.6
(-1.4)
A 		11.1
(0.3)
A 		10.2
(-0.1)
A 		18.4
(3)
A 		2.4
(-3)
A 		16
B 11.6
(-0.7)
A 		21
(3)
A 		5.7
(-3)
A 		9.5
(-1.5)
A 		6.6
(-2.6)
A 		12.2
(-0.5)
A 		15
C 9.1
(-0.7)
A 		22.6
(3)
A 		16.5
(1.3)
A 		0.8
(-3)
A 		13.6
(0.5)
A 		2.1
(-2.6)
A 		22
avr 8
(-1.7) 		16.7
(3) 		11.1
(-0) 		6.8
(-2.4) 		12.9
(0.9) 		5.6
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179681_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13007
Sequence Type Exemplar sequence
Representative Public ID R08A2.4 NCBI
Target Description R08A2.4 /REP_DB=WormBase Gene ID /WP=CE23905 /TR=Q9U392 /GB=CAB57905.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074232(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074232 NCBI Caenorhabditis elegans R08A2.4 (R08A2.4) mRNA, complete cds. 11/11 None
R08A2.4 ENSEMBL cdna:known chromosome:CEL140:V:14719183:14720335:1 gene:R08A2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14719182-14720335(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R08A2.4
Entrez Gene 187693 Entrez gene
SwissProt Q9U392 EMBL-EBI
WormBase CE23905 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB57905 Hypothetical protein R08A2.4 [Caenorhabditis elegans] ref|NP_506633.1| R08A2.4 [Caenorhabditis elegans] 1.0E-163
blast CAE71645 Hypothetical protein CBG18616 [Caenorhabditis briggsae] 6.0E-17
blast CAE72995 Hypothetical protein CBG20341 [Caenorhabditis briggsae] 2.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.0E-8
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.4E-7
Sequence
Target Sequence 
>C. ELEGANS:179681_AT
aatatcaacgggcactacttcaaaggttttctataaactttgaatcggatggagatatta
aaatatttgaagaattggttcacatcctcaaagccaaacgacgcttccttcaggtagaaa
caattgatattagtttattggaataccttcaagctgtacaagttttgacgtacattcatc
cagaaacactcaaaactctgaattttcatatttattcggaaaaatgcaatgatctagatc
ttttggaaattgttaaactgaaacaatggagacttgcttccaatttgaacatttcaagct
ttgctgcttcaatttccgtctcttactttatacagagtaactgctcaatttttatacaat
cttcaagaatgcaatattttatcatttacaatcgatgtatcagccaagaaattgttcaag
aggcttttggctcttcaaataactgggaacctaaccaagtttggtactttcgaatcccag
aagcctctaaaattttaacgatcatgttttgtgtaaatagccacattcaattcttcaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATATCAACGGGCACTACTTCAAAG 382 171 332 Antisense
GAATTGGTTCACATCCTCAAAGCCA 670 323 403 Antisense
CAAAGCCAAACGACGCTTCCTTCAG 346 191 420 Antisense
GGAATACCTTCAAGCTGTACAAGTT 15 533 471 Antisense
GACGTACATTCATCCAGAAACACTC 151 379 498 Antisense
GGAGACTTGCTTCCAATTTGAACAT 446 519 599 Antisense
AAGCTTTGCTGCTTCAATTTCCGTC 287 151 627 Antisense
AATTTCCGTCTCTTACTTTATACAG 556 173 642 Antisense
GAGGCTTTTGGCTCTTCAAATAACT 666 403 751 Antisense
GTACTTTCGAATCCCAGAAGCCTCT 674 457 795 Antisense
AATAGCCACATTCAATTCTTCAAGC 247 173 847 Antisense
Sequence Source Affymetrix Proprietary Database