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[179680_at]

Description ZK287.7 /REP_DB=WormBase Gene ID /WP=CE27557 /TR=Q23459 /GB=CAA94803.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 98      4grp_high_8_8 > 11      6grp_total > 96      4grp_total > 06      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 103.6
(3)
P 		28.3
(-3)
A 		62.2
(-0.3)
P 		95.9
(2.4)
A 		75
B 101.3
(2.2)
P 		84.1
(-1)
P 		73
(-3)
A 		105.8
(3)
P 		33
C 102.9
(0.4)
P 		52.8
(-3)
M 		85.2
(-0.8)
P 		140.9
(3)
P 		88
avr 102.6
(1.8) 		55.1
(-3) 		73.5
(-1.1) 		114.2
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 166
1 2 3 4 5 6 range
A 56.1
(-3)
M 		61.5
(-2.7)
P 		120.1
(1)
P 		128.1
(1.5)
P 		127.3
(1.5)
P 		151.8
(3)
P 		96
B 84.5
(-2.8)
P 		95.6
(-2.3)
P 		98.8
(-2.2)
P 		80
(-3)
P 		210.6
(2.5)
P 		222.4
(3)
P 		142
C 102.1
(-0.9)
P 		69.8
(-3)
P 		79.7
(-2.4)
P 		162.9
(3)
P 		124.4
(0.5)
P 		162
(2.9)
P 		93
avr 80.9
(-2.7) 		75.6
(-3) 		99.5
(-1.6) 		123.7
(-0.2) 		154.1
(1.6) 		178.7
(3) 		103
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 37.7
(3)
P 		6.1
(-3)
A 		16.3
(-1.1)
P 		14
(-1.5)
A 		32
B 32.3
(3)
P 		20.8
(-1.5)
P 		16.9
(-3)
A 		22.5
(-0.8)
P 		15
C 34.1
(3)
P 		15.2
(-3)
M 		29.7
(1.6)
P 		23.8
(-0.3)
P 		19
avr 34.7
(3) 		14
(-3) 		21
(-1) 		20.1
(-1.2) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 10.3
(-3)
M 		21.9
(-0.5)
P 		26.1
(0.4)
P 		32.5
(1.7)
P 		38.4
(3)
P 		37
(2.7)
P 		28
B 29.4
(-2.2)
P 		31.8
(-2)
P 		24
(-2.7)
P 		21.2
(-3)
P 		85.5
(3)
P 		82.9
(2.8)
P 		64
C 37.9
(0.1)
P 		21.3
(-2.8)
P 		20.3
(-3)
P 		32.8
(-0.8)
P 		40.3
(0.5)
P 		54.2
(3)
P 		34
avr 25.9
(-2.6) 		25
(-2.7) 		23.5
(-3) 		28.8
(-2.1) 		54.7
(2.4) 		58
(3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179680_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12082
Sequence Type Exemplar sequence
Representative Public ID ZK287.7 NCBI
Target Description ZK287.7 /REP_DB=WormBase Gene ID /WP=CE27557 /TR=Q23459 /GB=CAA94803.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073097(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073097 NCBI Caenorhabditis elegans ZK287.7 (ZK287.7) mRNA, complete cds. 11/11 A 
SNAP00000034526 ENSEMBL cdna:SNAP chromosome:CEL140:V:9695652:9697269:1 11/11 None
GENEFINDER00000034529 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9695652:9697269:1 11/11 None
ZK287.7 ENSEMBL cdna:known chromosome:CEL140:V:9695482:9697304:1 gene:ZK287.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9695651-9697269(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK287.7
Entrez Gene 179359 Entrez gene
SwissProt Q23459 EMBL-EBI
WormBase CE27557 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94803 Hypothetical protein ZK287.7 [Caenorhabditis elegans] ref|NP_505498.1| ZK287.7 [Caenorhabditis elegans] 0.0
blast CAE72231 Hypothetical protein CBG19344 [Caenorhabditis briggsae] 1.0E-145
Sequence
Target Sequence 
>C. ELEGANS:179680_AT
atgagctatcgagtactggacacaaaaaatggaatttcattgatcgacttttcagtaaat
aaatttgctcgtcatctcccacgactgatgctaactcagatgtcttgtccgatcctcgga
gacactatctactggagacgtttggccgacgtggatggagttcctgaacttatcagcgcg
ggaaacatggggcatagaattttcatcccacctcatctttgttcgacgctcgaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAGCTATCGAGTACTGGACACAA 705 43 694 Antisense
GGAATTTCATTGATCGACTTTTCAG 417 533 724 Antisense
CATCTCCCACGACTGATGCTAACTC 297 213 766 Antisense
TAACTCAGATGTCTTGTCCGATCCT 705 637 785 Antisense
TCCGATCCTCGGAGACACTATCTAC 74 595 801 Antisense
TATCTACTGGAGACGTTTGGCCGAC 447 659 819 Antisense
GTTTGGCCGACGTGGATGGAGTTCC 707 431 833 Antisense
GGAGTTCCTGAACTTATCAGCGCGG 117 519 850 Antisense
ATCAGCGCGGGAAACATGGGGCATA 41 29 865 Antisense
GGGCATAGAATTTTCATCCCACCTC 177 493 883 Antisense
CTCATCTTTGTTCGACGCTCGAAAC 512 229 905 Antisense
Sequence Source Affymetrix Proprietary Database