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[179679_at]

Description F52H3.4 /REP_DB=WormBase Gene ID /WP=CE03400 /TR=Q20682 /GB=CAA91324.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 98      6grp_total > 97      4grp_total > 24      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 19.8
(-3)
A 		49.8
(-0.8)
A 		70.5
(0.7)
A 		102.9
(3)
P 		83
B 39.2
(-3)
A 		44.9
(-1.8)
A 		60.8
(1.5)
P 		68
(3)
P 		29
C 42.3
(-3)
P 		53
(0.1)
A 		54.1
(0.5)
P 		62.7
(3)
P 		20
avr 33.8
(-3) 		49.2
(-0.9) 		61.8
(0.8) 		77.9
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 325
1 2 3 4 5 6 range
A 90.4
(-2.1)
A 		47.3
(-3)
A 		59.5
(-2.8)
P 		96.6
(-2)
P 		341.4
(3)
P 		325.3
(2.7)
P 		294
B 54.9
(-2.8)
P 		48.9
(-2.9)
P 		42.9
(-3)
P 		92.4
(-2)
P 		262
(1.4)
P 		342.4
(3)
P 		300
C 37.7
(-3)
P 		74.7
(-2.3)
P 		61.2
(-2.6)
P 		169.9
(-0.6)
P 		196.1
(-0.1)
P 		362.6
(3)
P 		325
avr 61
(-2.9) 		57
(-2.9) 		54.5
(-3) 		119.6
(-1.6) 		266.5
(1.4) 		343.4
(3) 		289
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 7.2
(-3)
A 		10.8
(-1.1)
A 		18.4
(3)
A 		15.1
(1.2)
P 		11
B 12.5
(-0.5)
A 		11.1
(-3)
A 		14.1
(2.3)
P 		14.5
(3)
P 		3
C 14
(-0.5)
P 		15.2
(0.3)
A 		18.9
(3)
P 		10.6
(-3)
P 		8
avr 11.2
(-3) 		12.4
(-1.8) 		17.1
(3) 		13.4
(-0.8) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 16.7
(-2.8)
A 		16.8
(-2.7)
A 		13
(-3)
P 		24.5
(-2.2)
P 		103
(3)
P 		79.2
(1.4)
P 		90
B 19.1
(-2.6)
P 		16.3
(-2.7)
P 		10.4
(-3)
P 		24.5
(-2.3)
P 		106.4
(1.9)
P 		127.7
(3)
P 		117
C 14
(-3)
P 		22.8
(-2.5)
P 		15.6
(-2.9)
P 		34.2
(-1.9)
P 		63.4
(-0.2)
P 		121.4
(3)
P 		107
avr 16.6
(-2.8) 		18.6
(-2.7) 		13
(-3) 		27.7
(-2.1) 		90.9
(1.8) 		109.4
(3) 		96
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179679_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2936
Sequence Type Exemplar sequence
Representative Public ID F52H3.4 NCBI
Target Description F52H3.4 /REP_DB=WormBase Gene ID /WP=CE03400 /TR=Q20682 /GB=CAA91324.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063770(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063770 NCBI Caenorhabditis elegans F52H3.4 (F52H3.4) mRNA, complete cds. 11/11 None
SNAP00000021627 ENSEMBL cdna:SNAP chromosome:CEL140:II:10041079:10042266:1 11/11 None
GENEFINDER00000021631 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10039613:10042266:1 11/11 None
F52H3.4 ENSEMBL cdna:known chromosome:CEL140:II:10041045:10042400:1 gene:F52H3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10039609-10042263(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F52H3.4
Entrez Gene 174566 Entrez gene
SwissProt Q20682 EMBL-EBI
WormBase CE37522 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91324 Hypothetical protein F52H3.4 [Caenorhabditis elegans] ref|NP_496171.2| F52H3.4 [Caenorhabditis elegans] 1.0E-170
Sequence
Target Sequence 
>C. ELEGANS:179679_AT
taactcttcttccttatcgagcagctcaaccactcttcaaggaaccacggactttgttcc
cccttccagtactatgacttcgagttctgctattccgttttctcgcccattcgtcagcgt
ctccgatttcgcggaccaactacatcatccgatggtgaacggtgccgatttgccgataga
agacgtgaaacaagaaacaggagagagcggtgagactttgtcaagaaccctttcgatgca
gaacgacctcagcggttttgcgagagcagtggcagataatatgaaagaaatgaatgattt
attctctcttctgaggaacaaatcaaacgaaagctccttctcgaatgccaatctaggacg
caaaagaattgtggaccacctgaaagtgtttcaagaaggcatggtatcgatagattcgtc
actgcaagatgtcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAACTCTTCTTCCTTATCGAGCAGC 649 637 627 Antisense
ACCACTCTTCAAGGAACCACGGACT 336 83 655 Antisense
CCCCTTCCAGTACTATGACTTCGAG 93 261 686 Antisense
ATGACTTCGAGTTCTGCTATTCCGT 480 45 700 Antisense
ATTTCGCGGACCAACTACATCATCC 198 17 752 Antisense
TGGTGAACGGTGCCGATTTGCCGAT 658 551 779 Antisense
GAGACTTTGTCAAGAACCCTTTCGA 564 393 838 Antisense
GCAGAACGACCTCAGCGGTTTTGCG 649 309 864 Antisense
GATTTATTCTCTCTTCTGAGGAACA 377 429 922 Antisense
AAACGAAAGCTCCTTCTCGAATGCC 418 125 951 Antisense
TAGATTCGTCACTGCAAGATGTCCA 263 653 1037 Antisense
Sequence Source Affymetrix Proprietary Database