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[179678_at]

Description W01D2.3 /REP_DB=WormBase Gene ID /WP=CE20126 /TR=Q9XU65 /GB=CAB05634.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 49      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 4.6
(-3)
A 		18.9
(3)
A 		7.6
(-1.7)
A 		8.1
(-1.5)
A 		14
B 30.2
(0.7)
A 		5.9
(-2.9)
A 		45.3
(3)
A 		5.1
(-3)
A 		40
C 3.1
(-3)
A 		35.1
(3)
A 		4.7
(-2.7)
A 		24.1
(0.9)
A 		32
avr 12.6
(-2.8) 		20
(3) 		19.2
(2.4) 		12.4
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 10.5
(-2.4)
A 		6.4
(-2.7)
A 		2.1
(-3)
A 		4.3
(-2.8)
A 		84.7
(3)
A 		47.7
(0.3)
A 		83
B 12.1
(-2.2)
A 		2.9
(-3)
A 		4.6
(-2.8)
A 		15.4
(-1.8)
A 		68
(3)
A 		54.2
(1.7)
A 		65
C 6.2
(-3)
A 		12.2
(-2.5)
A 		12
(-2.5)
A 		8.9
(-2.8)
A 		42.2
(0.1)
A 		76.9
(3)
A 		71
avr 9.6
(-2.7) 		7.2
(-2.9) 		6.2
(-3) 		9.5
(-2.7) 		65
(3) 		59.6
(2.4) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.7
(-2)
A 		4.1
(3)
A 		2
(-1.3)
A 		1.2
(-3)
A 		3
B 9.6
(2.4)
A 		1.5
(-2.7)
A 		10.5
(3)
A 		1.1
(-3)
A 		9
C 1
(-3)
A 		10.1
(3)
A 		1.6
(-2.6)
A 		4.1
(-1)
A 		9
avr 4.1
(0.9) 		5.2
(3) 		4.7
(2) 		2.1
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 1.9
(-2.7)
A 		2.3
(-2.6)
A 		0.5
(-3)
A 		1.1
(-2.9)
A 		25.6
(3)
A 		11.6
(-0.3)
A 		25
B 4.2
(-2.3)
A 		1
(-3)
A 		1.1
(-3)
A 		4.1
(-2.3)
A 		27.6
(3)
A 		20.2
(1.3)
A 		27
C 2.3
(-2.9)
A 		3.7
(-2.5)
A 		3.1
(-2.7)
A 		1.8
(-3)
A 		13.6
(-0)
A 		25.7
(3)
A 		24
avr 2.8
(-2.7) 		2.3
(-2.8) 		1.6
(-3) 		2.3
(-2.8) 		22.3
(3) 		19.2
(2.1) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179678_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2879
Sequence Type Exemplar sequence
Representative Public ID W01D2.3 NCBI
Target Description W01D2.3 /REP_DB=WormBase Gene ID /WP=CE20126 /TR=Q9XU65 /GB=CAB05634.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064668(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064668 NCBI Caenorhabditis elegans W01D2.3 (W01D2.3) mRNA, complete cds. 11/11 None
SNAP00000015967 ENSEMBL cdna:SNAP chromosome:CEL140:II:14803046:14804141:-1 11/11 None
GENEFINDER00000015974 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14801251:14804141:-1 11/11 None
W01D2.3 ENSEMBL cdna:known chromosome:CEL140:II:14803046:14804141:-1 gene:W01D2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14803042-14804138(-) 96.16 100.0
Public Domain and Genome References
Gene Title
Ensembl W01D2.3
Entrez Gene 189092 Entrez gene
SwissProt Q9XU65 EMBL-EBI
WormBase CE20126 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05634 Hypothetical protein W01D2.3 [Caenorhabditis elegans] ref|NP_497069.1| W01D2.3 [Caenorhabditis elegans] 1.0E-113
blast CAB05634 Hypothetical protein W01D2.3 [Caenorhabditis elegans] ref|NP_497069.1| W01D2.3 [Caenorhabditis elegans] 1.0E-109
blast CAE60619 Hypothetical protein CBG04260 [Caenorhabditis briggsae] 3.0E-70
blast CAE60619 Hypothetical protein CBG04260 [Caenorhabditis briggsae] 6.0E-70
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497069.1 3 103-125,159-181,186-208
W01D2.3 3 103-125,159-181,186-208
SNAP00000015967 3 103-125,159-181,186-208
GENEFINDER00000015974 2 103-125,160-182
Sequence
Target Sequence 
>C. ELEGANS:179678_AT
taacacggctccgatatcgctagcgtccgatgtcaaaaaatccggttttttatctacttt
ggccagttatctgacgtctaacgcgaagagtgatccgaagccagtaatccaacaaaagaa
gctgatgaactcgtgggatgacgtggatcttgtaaaattgaatatcctcgtgtgcaacgt
gctctacgaaccgcatagctatgaattgctatttcgagaaattgagcgggttttcgggag
aagaagggagcattgtttctatggagctctgggtgttttactcactcttgtacttctgaa
tgatgcagtgggagcgatcacagcgtttatgacccttatcatcccaacgttcatgacagt
caccgcgatctcttccacgtcttcctatgaaaatccgagcttcctcaagaatcatcaaga
tttcttcgttcgctactggaccgtctacgcagtttttgtcaccggcgaatcgttcttgtc
atcacttattcactgggatcttcgtcttttccgtctaatcttcatgtcaatgtgcctttc
gacccggattccggtgcttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAACACGGCTCCGATATCGCTAGCG 649 639 63 Antisense
GAATATCCTCGTGTGCAACGTGCTC 85 327 222 Antisense
GAGCTCTGGGTGTTTTACTCACTCT 298 387 326 Antisense
GATCACAGCGTTTATGACCCTTATC 252 421 378 Antisense
ATCCCAACGTTCATGACAGTCACCG 687 35 403 Antisense
TCAAGATTTCTTCGTTCGCTACTGG 656 631 477 Antisense
TGGACCGTCTACGCAGTTTTTGTCA 630 543 499 Antisense
TCACCGGCGAATCGTTCTTGTCATC 127 627 521 Antisense
TTATTCACTGGGATCTTCGTCTTTT 422 677 548 Antisense
TTCATGTCAATGTGCCTTTCGACCC 147 687 583 Antisense
TTTCGACCCGGATTCCGGTGCTTGC 152 561 599 Antisense
Sequence Source Affymetrix Proprietary Database