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[179677_at]

Description T06E6.6 /REP_DB=WormBase Gene ID /WP=CE13323 /TR=O45760 /GB=CAB03315.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 01      6grp_total_sub > Hat      6grp_cgc > 54      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 4.2
(-3)
A 		21.6
(-1.5)
A 		35.9
(-0.3)
A 		73.5
(3)
P 		69
B 30.5
(3)
A 		12.8
(-1.2)
A 		5
(-3)
A 		22.8
(1.2)
A 		26
C 28.4
(-1.5)
A 		18.9
(-3)
A 		22.7
(-2.4)
A 		57
(3)
P 		38
avr 21
(-2.4) 		17.8
(-3) 		21.2
(-2.4) 		51.1
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 12.8
(-2.2)
A 		9.5
(-3)
A 		33.1
(3)
A 		12
(-2.4)
A 		19.7
(-0.4)
A 		13.2
(-2.1)
A 		24
B 5.6
(-2.9)
A 		29.2
(3)
A 		5.5
(-3)
A 		13
(-1.1)
A 		25.6
(2.1)
A 		5.4
(-3)
A 		24
C 9.3
(-2.3)
A 		38.7
(3)
A 		26.7
(0.9)
A 		5.2
(-3)
A 		15.1
(-1.2)
A 		22
(0)
A 		34
avr 9.2
(-3) 		25.8
(3) 		21.8
(1.6) 		10.1
(-2.7) 		20.1
(0.9) 		13.5
(-1.4) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.5
(-3)
A 		4.7
(-0.9)
A 		9.4
(2.1)
A 		10.8
(3)
P 		9
B 9.7
(3)
A 		3.1
(-1.7)
A 		1.2
(-3)
A 		4.9
(-0.4)
A 		9
C 9.4
(2.7)
A 		5.4
(-3)
A 		7.9
(0.6)
A 		9.6
(3)
P 		4
avr 6.9
(0.8) 		4.4
(-3) 		6.2
(-0.3) 		8.4
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 2.4
(-3)
A 		3.4
(-1.8)
A 		7.2
(3)
A 		3
(-2.3)
A 		6
(1.5)
A 		3.2
(-2)
A 		5
B 2
(-2.5)
A 		9.7
(2.5)
A 		1.3
(-3)
A 		3.4
(-1.6)
A 		10.4
(3)
A 		2
(-2.5)
A 		9
C 3.4
(-1.7)
A 		11.8
(3)
A 		6.8
(0.2)
A 		1
(-3)
A 		4.9
(-0.8)
A 		7.4
(0.6)
A 		11
avr 2.6
(-2.9) 		8.3
(3) 		5.1
(-0.3) 		2.5
(-3) 		7.1
(1.8) 		4.2
(-1.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179677_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13001
Sequence Type Exemplar sequence
Representative Public ID T06E6.6 NCBI
Target Description T06E6.6 /REP_DB=WormBase Gene ID /WP=CE13323 /TR=O45760 /GB=CAB03315.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074430(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074430 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-257) (srh-257) mRNA, complete cds. 11/11 None
T06E6.6 ENSEMBL cdna:known chromosome:CEL140:V:15409814:15413966:1 gene:T06E6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15409813-15410803(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-257
Ensembl T06E6.6
Entrez Gene 188185 Entrez gene
SwissProt O45760 EMBL-EBI
WormBase CE36013 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03315 Hypothetical protein T06E6.6 [Caenorhabditis elegans] ref|NP_506831.2| Serpentine Receptor, class H family member (srh-257) [Caenorhabditis elegans] 0.0
blast CAB03316 Hypothetical protein T06E6.7 [Caenorhabditis elegans] ref|NP_506830.2| Serpentine Receptor, class H family member (srh-258) [Caenorhabditis elegans] 1.0E-122
blast CAB03317 Hypothetical protein T06E6.8 [Caenorhabditis elegans] ref|NP_506833.2| Serpentine Receptor, class H family member (srh-264) [Caenorhabditis elegans] 1.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506831.2 7 10-31,50-72,87-109,130-149,189-211,231-253,268-287
T06E6.6 7 10-31,50-72,87-109,130-149,189-211,231-253,268-287
Sequence
Target Sequence 
>C. ELEGANS:179677_AT
tcgctgacagtttttactatcccatttgtaatattcccagcactggctggaactccatta
ggaattctaactgaatggtttgaagttcccacttcatttcaaacctattttgtgtttact
aatttcttcattgtaatggttaatcattttttggtagtggaaaaccgttattatcactta
ttcgcgaaagaaaaggcatggcgtcattttcgcaagccagtgattgcttttgattttttg
gtcacttcgacttatatgatccccattatgataaatgtgcctgatcagatgaaaggcaag
gaattcatatacaagacacatattgaaatcatccatagcaatcaagttgaagtgtttcag
caagtgcccagtctatcatctgaaattaagagtatggagctatatgttctggctaccgat
tataacctgttcttggcagaattgatttttatggcggggtttctttctataca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGCTGACAGTTTTTACTATCCCAT 538 597 181 Antisense
CCCATTTGTAATATTCCCAGCACTG 465 259 201 Antisense
TTCCCACTTCATTTCAAACCTATTT 326 697 266 Antisense
AAACCGTTATTATCACTTATTCGCG 549 103 342 Antisense
AGGCATGGCGTCATTTTCGCAAGCC 686 53 374 Antisense
GCCAGTGATTGCTTTTGATTTTTTG 345 281 396 Antisense
CACTTCGACTTATATGATCCCCATT 212 197 423 Antisense
GCAAGTGCCCAGTCTATCATCTGAA 533 321 540 Antisense
GGAGCTATATGTTCTGGCTACCGAT 18 521 576 Antisense
GGCTACCGATTATAACCTGTTCTTG 220 501 591 Antisense
TTATGGCGGGGTTTCTTTCTATACA 12 677 629 Antisense
Sequence Source Affymetrix Proprietary Database