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[179675_at]

Description W03H9.1 /REP_DB=WormBase Gene ID /WP=CE20134 /TR=Q9U353 /GB=CAB63317.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 29      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 41.9
(2.2)
A 		23.7
(-1.3)
A 		14.6
(-3)
A 		46.4
(3)
A 		32
B 38.4
(2.6)
A 		40.6
(3)
A 		6.9
(-3)
A 		10.8
(-2.3)
A 		34
C 37.1
(0.4)
A 		7.5
(-2.6)
A 		3.3
(-3)
A 		63.4
(3)
A 		60
avr 39.1
(2.8) 		23.9
(-0.1) 		8.3
(-3) 		40.2
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 64
(3)
A 		15.4
(-2.1)
A 		15.3
(-2.1)
A 		7.2
(-3)
A 		13.2
(-2.4)
A 		7.1
(-3)
A 		57
B 16.2
(-2.1)
A 		49.8
(0.5)
A 		58.1
(1.1)
A 		82.1
(3)
A 		4.7
(-3)
A 		5.2
(-3)
A 		77
C 48.9
(3)
A 		5.5
(-3)
A 		12.8
(-2)
A 		42.4
(2.1)
A 		9.2
(-2.5)
A 		6.6
(-2.8)
A 		43
avr 43
(2.9) 		23.6
(-0.2) 		28.7
(0.6) 		43.9
(3) 		9
(-2.6) 		6.3
(-3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 15.2
(3)
A 		5.2
(-2.3)
A 		3.8
(-3)
A 		6.8
(-1.4)
A 		11
B 12.2
(3)
A 		10
(1.8)
A 		1.6
(-3)
A 		2.3
(-2.6)
A 		11
C 12.3
(3)
A 		2.1
(-2.5)
A 		1.2
(-3)
A 		10.7
(2.1)
A 		11
avr 13.2
(3) 		5.8
(-1) 		2.2
(-3) 		6.6
(-0.6) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 11.8
(3)
A 		5.5
(-0.7)
A 		3.3
(-2)
A 		1.8
(-2.9)
A 		4
(-1.6)
A 		1.7
(-3)
A 		10
B 5.6
(-1.9)
A 		16.6
(1.4)
A 		14.1
(0.7)
A 		21.8
(3)
A 		1.9
(-3)
A 		2
(-3)
A 		20
C 18.1
(3)
A 		1.7
(-3)
A 		3.3
(-2.4)
A 		8.5
(-0.5)
A 		3
(-2.5)
A 		2.2
(-2.8)
A 		16
avr 11.8
(3) 		7.9
(0.6) 		6.9
(-0) 		10.7
(2.3) 		3
(-2.4) 		2
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179675_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3702
Sequence Type Exemplar sequence
Representative Public ID W03H9.1 NCBI
Target Description W03H9.1 /REP_DB=WormBase Gene ID /WP=CE20134 /TR=Q9U353 /GB=CAB63317.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064554(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064554 NCBI Caenorhabditis elegans W03H9.1 (W03H9.1) mRNA, complete cds. 11/11 None
SNAP00000006320 ENSEMBL cdna:SNAP chromosome:CEL140:II:14147233:14150022:-1 11/11 None
GENEFINDER00000006321 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14147233:14150184:-1 11/11 None
W03H9.1 ENSEMBL cdna:known chromosome:CEL140:II:14147233:14150022:-1 gene:W03H9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14147229-14150019(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W03H9.1
Entrez Gene 189177 Entrez gene
SwissProt Q9U353 EMBL-EBI
WormBase CE20134 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63317 Hypothetical protein W03H9.1 [Caenorhabditis elegans] ref|NP_496955.1| W03H9.1 [Caenorhabditis elegans] 0.0
blast CAE61004 Hypothetical protein CBG04742 [Caenorhabditis briggsae] 9.0E-83
blast CAE61004 Hypothetical protein CBG04742 [Caenorhabditis briggsae] 1.0E-75
blast AAB38096 Hypothetical protein T07F8.1 [Caenorhabditis elegans] ref|NP_495482.1| T07F8.1 [Caenorhabditis elegans] 1.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR009689 EMBL-EBI Protein of unknown function DUF1280 3.4E-13
Pfam IPR009689 EMBL-EBI Protein of unknown function DUF1280 3.4E-13
Sequence
Target Sequence 
>C. ELEGANS:179675_AT
gatcagctcttgatgcgattttgcttacatcaataggaaaaaccagaaaacaatatgaaa
ttcttctttcgtcatttggctgcgacacacgcacttggtacaaggcgttcacgggaaacc
aagtacggaaaatactcagggaggttcggatcgacgccattttcgcacttctaagataca
ctcccgagaatgcccgagtcatgaaagcaatgaaaagtatggcaaagttgatgtcctgtt
ccaacaacaaaatttattccgaccaagagatcgactcaatcgaagctcttctgaatgatt
ttcttgaagaaatgaaacacgcgttcccagaagaaattgtgactccaaagcttcatctcc
tcgcatgtcacttgattccgtatatgagagagcatcatacatggggaagatcgtctgaac
aagccatagagcattttcatgctgtcatcaataacctcaaaacgcgttatgctccagttc
gtaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCAGCTCTTGATGCGATTTTGCT 323 421 1829 Antisense
TCTTCTTTCGTCATTTGGCTGCGAC 356 617 1890 Antisense
GCTGCGACACACGCACTTGGTACAA 169 297 1907 Antisense
TACTCAGGGAGGTTCGGATCGACGC 523 553 1961 Antisense
CGCCATTTTCGCACTTCTAAGATAC 640 257 1983 Antisense
TAAGATACACTCCCGAGAATGCCCG 443 637 2000 Antisense
GAAATGAAACACGCGTTCCCAGAAG 195 361 2137 Antisense
GAAATTGTGACTCCAAAGCTTCATC 428 363 2161 Antisense
CTCGCATGTCACTTGATTCCGTATA 580 233 2188 Antisense
TCATGCTGTCATCAATAACCTCAAA 500 621 2265 Antisense
AAACGCGTTATGCTCCAGTTCGTAA 302 127 2288 Antisense
Sequence Source Affymetrix Proprietary Database