[Home] | [Total List]

[179674_s_at]

Description T04F8.2 /REP_DB=WormBase Gene ID /WP=CE23945 /TR=Q22162 /GB=CAA91478.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 10      4grp_highest_8_8 > 44      4grp_high_8_8 > 08      6grp_highest_nonorm > 81      6grp_total > 32      4grp_total > 31      6grp_highest_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 267.9
(3)
P 		161
(-3)
P 		202.6
(-0.7)
P 		212
(-0.1)
P 		107
B 200.9
(3)
P 		199.6
(2.7)
P 		171.7
(-2.9)
P 		171.4
(-3)
P 		30
C 266.8
(3)
P 		164.8
(-3)
P 		215.2
(-0)
P 		235.2
(1.1)
P 		102
avr 245.2
(3) 		175.1
(-3) 		196.5
(-1.2) 		206.2
(-0.3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 175
1 2 3 4 5 6 range
A 246.4
(-0.4)
P 		223.2
(-1.2)
P 		345.5
(3)
P 		232.9
(-0.9)
P 		236.5
(-0.7)
P 		170.3
(-3)
P 		175
B 280.9
(2.6)
P 		236.9
(-0.1)
P 		287.3
(3)
P 		240.1
(0.1)
P 		285.1
(2.9)
P 		190.9
(-3)
P 		96
C 266.3
(2.4)
P 		266.4
(2.4)
P 		180
(-3)
P 		275.7
(3)
P 		227.9
(0)
P 		223.1
(-0.3)
P 		96
avr 264.5
(2.5) 		242.2
(0.7) 		270.9
(3) 		249.6
(1.3) 		249.8
(1.3) 		194.8
(-3) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 97.6
(3)
P 		34.9
(-2.6)
P 		53
(-1)
P 		31
(-3)
P 		67
B 64.1
(3)
P 		49.3
(-0.2)
P 		39.8
(-2.3)
P 		36.5
(-3)
P 		28
C 88.3
(3)
P 		47.4
(-2)
P 		75
(1.4)
P 		39.7
(-3)
P 		49
avr 83.3
(3) 		43.9
(-2) 		55.9
(-0.5) 		35.7
(-3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 45.4
(-2.4)
P 		79.4
(3)
P 		75.2
(2.3)
P 		59.1
(-0.2)
P 		71.4
(1.7)
P 		41.5
(-3)
P 		38
B 97.7
(0.9)
P 		78.9
(-1.2)
P 		69.8
(-2.3)
P 		63.6
(-3)
P 		115.8
(3)
P 		71.2
(-2.1)
P 		52
C 98.7
(3)
P 		81.3
(1)
P 		45.8
(-3)
P 		55.5
(-1.9)
P 		73.8
(0.2)
P 		74.7
(0.3)
P 		53
avr 80.6
(1.6) 		79.9
(1.5) 		63.6
(-2.1) 		59.4
(-3) 		87
(3) 		62.5
(-2.3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179674_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16546
Sequence Type Exemplar sequence
Representative Public ID T04F8.2 NCBI
Target Description T04F8.2 /REP_DB=WormBase Gene ID /WP=CE23945 /TR=Q22162 /GB=CAA91478.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077546(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077546 NCBI Caenorhabditis elegans T04F8.2 (T04F8.2) mRNA, complete cds. 11/11 None
GENEFINDER00000020413 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11653859:11658148:-1 11/11 None
T04F8.2.3 ENSEMBL cdna:known chromosome:CEL140:X:11653149:11656491:-1 gene:T04F8.2 11/11 A 
T04F8.2.2 ENSEMBL cdna:known chromosome:CEL140:X:11653149:11656491:-1 gene:T04F8.2 11/11 A 
T04F8.2.1 ENSEMBL cdna:known chromosome:CEL140:X:11653491:11656491:-1 gene:T04F8.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020399 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11653858-11656479(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T04F8.2
Entrez Gene 181352 Entrez gene
SwissProt Q22162 EMBL-EBI
WormBase CE23945 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1627502_AT dm
DROSGENOME1:154379_AT dm
Protein Similarities
Method ID Description E-Value
blast CAA91478 Hypothetical protein T04F8.2 [Caenorhabditis elegans] ref|NP_509947.1| T04F8.2 [Caenorhabditis elegans] 0.0
blast CAE70601 Hypothetical protein CBG17275 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509947.1 6 217-239,259-281,321-343,352-374,394-416,423-445
T04F8.2.3 6 217-239,259-281,321-343,352-374,394-416,423-445
T04F8.2.2 6 217-239,259-281,321-343,352-374,394-416,423-445
T04F8.2.1 6 217-239,259-281,321-343,352-374,394-416,423-445
GENEFINDER00000020413 7 43-65,256-278,298-320,360-382,391-413,433-455,462-484
Sequence
Target Sequence 
>C. ELEGANS:179674_S_AT
tacgatgttcttcacgacgtggacatttattcggcgtggcctggccatggaatgattctt
ataagaataatctatgctatttggtttctaatcgagattcgaaaattgattgatagtgag
caaagtcggcagaaagccgaatttttagctcactttggtgctggtttccttgtatggttt
gtgtcattgccaatgattggaatcgtcgcatcttttgtatcgcagctatggaggttttcg
cttattcttgcactaacaacattttcaaattttgtggctttgtcatgccttgttcatcag
ttttggccgaaatcttcgtacagaaagttttttgcagactatacaaacggccatcggagg
ttgggacgagatgactcacacgagttcaacgactacgacaactttcttttttacgctgaa
gattccgattccgaaaccgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACGATGTTCTTCACGACGTGGACA 37 643 1042 Antisense
GACGTGGACATTTATTCGGCGTGGC 461 377 1057 Antisense
GTGGCCTGGCCATGGAATGATTCTT 151 491 1077 Antisense
GCCGAATTTTTAGCTCACTTTGGTG 35 285 1177 Antisense
TCACTTTGGTGCTGGTTTCCTTGTA 9 611 1191 Antisense
GAATCGTCGCATCTTTTGTATCGCA 520 329 1241 Antisense
GAGGTTTTCGCTTATTCTTGCACTA 184 403 1272 Antisense
GTGGCTTTGTCATGCCTTGTTCATC 150 491 1315 Antisense
CATCAGTTTTGGCCGAAATCTTCGT 477 211 1336 Antisense
TACGACAACTTTCTTTTTTACGCTG 46 643 1435 Antisense
GAAGATTCCGATTCCGAAACCGATT 620 337 1459 Antisense
Sequence Source Affymetrix Proprietary Database