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[179673_at]

Description T25B9.6 /REP_DB=WormBase Gene ID /WP=CE06505 /TR=Q22769 /GB=CAA94377.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 17      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 2.2
(-3)
A 		37.8
(3)
A 		9
(-1.9)
A 		4.8
(-2.6)
A 		36
B 6.8
(-3)
A 		34.8
(3)
A 		22.7
(0.4)
A 		14.9
(-1.3)
A 		28
C 8.5
(-3)
A 		9.6
(-3)
A 		25.7
(-2.3)
A 		152.7
(3)
A 		144
avr 5.8
(-3) 		27.4
(-0.5) 		19.1
(-1.5) 		57.5
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 5.3
(-2.8)
A 		3.7
(-2.9)
A 		2.9
(-3)
A 		22.5
(-1.2)
A 		50
(1.4)
A 		66.7
(3)
A 		64
B 8.4
(-3)
A 		21.9
(-2)
A 		23.3
(-1.9)
A 		25.8
(-1.7)
A 		72.9
(1.9)
A 		88
(3)
A 		80
C 37.1
(-1.2)
A 		3.9
(-2.9)
A 		2.4
(-3)
A 		7.4
(-2.7)
A 		67.1
(0.3)
A 		120.1
(3)
P 		118
avr 16.9
(-2.5) 		9.8
(-3) 		9.5
(-3) 		18.6
(-2.3) 		63.3
(0.9) 		91.6
(3) 		82
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 0.8
(-2.9)
A 		8.2
(3)
A 		2.4
(-1.6)
A 		0.7
(-3)
A 		8
B 2.2
(-3)
A 		8.6
(3)
A 		5.3
(-0.1)
A 		3.2
(-2.1)
A 		6
C 2.8
(-3)
A 		2.8
(-3)
A 		9
(-1.4)
A 		25.7
(3)
A 		23
avr 1.9
(-3) 		6.5
(0.5) 		5.6
(-0.2) 		9.9
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 1
(-2.8)
A 		1.3
(-2.7)
A 		0.6
(-3)
A 		5.7
(-1)
A 		15.1
(2.6)
A 		16.2
(3)
A 		16
B 2.9
(-3)
A 		7.3
(-2.1)
A 		5.7
(-2.4)
A 		6.8
(-2.2)
A 		29.6
(2.4)
A 		32.8
(3)
A 		30
C 13.7
(-1)
A 		1.2
(-2.9)
A 		0.6
(-3)
A 		1.5
(-2.9)
A 		21.7
(0.2)
A 		40.2
(3)
P 		40
avr 5.9
(-2.2) 		3.3
(-2.8) 		2.3
(-3) 		4.7
(-2.5) 		22.1
(1.3) 		29.7
(3) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179673_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9797
Sequence Type Exemplar sequence
Representative Public ID T25B9.6 NCBI
Target Description T25B9.6 /REP_DB=WormBase Gene ID /WP=CE06505 /TR=Q22769 /GB=CAA94377.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069594(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069594 NCBI Caenorhabditis elegans T25B9.6 (T25B9.6) mRNA, complete cds. 9/11 None
SNAP00000044114 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10758175:10760695:1 9/11 None
T25B9.6 ENSEMBL cdna:known chromosome:CEL140:IV:10758178:10760606:1 gene:T25B9.6 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000044120 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10758183-10760612(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T25B9.6
Entrez Gene 188884 Entrez gene
SwissProt Q22769 EMBL-EBI
WormBase CE35628 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94377 Hypothetical protein T25B9.6 [Caenorhabditis elegans] ref|NP_501995.2| T25B9.6 [Caenorhabditis elegans] 0.0
blast AAA83609 Hypothetical protein C31H1.1 [Caenorhabditis elegans] ref|NP_500865.1| C31H1.1 [Caenorhabditis elegans] 1.0E-109
blast AAA83609 Hypothetical protein C31H1.1 [Caenorhabditis elegans] ref|NP_500865.1| C31H1.1 [Caenorhabditis elegans] 1.0E-102
blast CAE64503 Hypothetical protein CBG09230 [Caenorhabditis briggsae] 5.0E-92
blast CAE64503 Hypothetical protein CBG09230 [Caenorhabditis briggsae] 6.0E-82
Sequence
Target Sequence 
>C. ELEGANS:179673_AT
tgagtttggaccttgggacactgcttccattttctctcaattttctaacaactctgatgg
tcacaccagtattcaatcgcttcaggatcaccactcttcctatgaactttcttcgtctga
tgatcactcaattttgccttctctttcctcgcgttcagtgccgaacaaaatttttgaaaa
caccgtcaaagaaattgtccaagatgatttggatttgaagactgccttatcgattggcga
gccaattgtagctggactaccaagaactcctattgataacgagacagaagttgtcagaag
ttgtacacaatctgattcggctgacactttcaacttctccagtgtttcgctcaatgagat
ggtagatgatgcgcttcacaccgccaagggagttggtgagtttcacaacaacaaaaaaca
attgcgctcttattgcttttctttgagaacttgtttcgccgaatctgcatctgctacaaa
cacatctgctacaaacctacttgacgctcttcacagttctgccctcaaatgcggagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGTTTGGACCTTGGGACACTGCT 227 555 1257 Antisense
GTCACACCAGTATTCAATCGCTTCA 204 465 1316 Antisense
CACTCTTCCTATGAACTTTCTTCGT 44 199 1348 Antisense
GATGATCACTCAATTTTGCCTTCTC 367 411 1375 Antisense
GACTGCCTTATCGATTGGCGAGCCA 444 373 1476 Antisense
CTTCTCCAGTGTTTCGCTCAATGAG 2 221 1590 Antisense
TGGTAGATGATGCGCTTCACACCGC 678 551 1616 Antisense
GCGCTCTTATTGCTTTTCTTTGAGA 43 289 1680 Antisense
TTCGCCGAATCTGCATCTGCTACAA 304 697 1711 Antisense
TGCTACAAACCTACTTGACGCTCTT 486 579 1743 Antisense
CAGTTCTGCCCTCAAATGCGGAGTT 112 207 1770 Antisense
Sequence Source Affymetrix Proprietary Database