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[179672_at]

Description F49B2.4 /REP_DB=WormBase Gene ID /WP=CE16075 /TR=O45538 /GB=CAB04426.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 13      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 71.4
(2.7)
A 		8.2
(-3)
A 		73.1
(2.9)
A 		74.2
(3)
A 		66
B 64.3
(1.9)
A 		45.3
(0.3)
A 		7.1
(-3)
A 		77.2
(3)
A 		70
C 62.8
(-1.8)
A 		86.4
(0.3)
A 		50.3
(-3)
A 		115.5
(3)
A 		65
avr 66.2
(-0) 		46.6
(-2.6) 		43.5
(-3) 		89
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 7.8
(-2.6)
A 		3.3
(-3)
A 		38.5
(0.5)
A 		7.4
(-2.6)
A 		64
(3)
A 		33
(-0.1)
A 		61
B 27.7
(-0.4)
A 		19.5
(-1.3)
A 		8.1
(-2.6)
A 		4.8
(-3)
A 		57
(3)
A 		40.7
(1.1)
A 		52
C 31.4
(0.3)
A 		6.5
(-2.8)
A 		36.6
(1)
A 		5
(-3)
A 		19.4
(-1.2)
A 		52.8
(3)
A 		48
avr 22.3
(-0.6) 		9.8
(-2.4) 		27.7
(0.2) 		5.7
(-3) 		46.8
(3) 		42.2
(2.3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 26
(3)
A 		1.8
(-3)
A 		19.1
(1.3)
A 		10.9
(-0.7)
A 		24
B 20.5
(3)
A 		11.2
(0)
A 		1.6
(-3)
A 		16.5
(1.7)
A 		19
C 20.8
(-0.3)
A 		24.8
(3)
A 		17.5
(-3)
A 		19.5
(-1.4)
A 		7
avr 22.4
(3) 		12.6
(-3) 		12.7
(-2.9) 		15.6
(-1.2) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 1.4
(-2.9)
A 		1.2
(-3)
A 		8.4
(-0.6)
A 		1.9
(-2.8)
A 		19.3
(3)
A 		8
(-0.7)
A 		18
B 9.7
(-0.7)
A 		6.5
(-1.6)
A 		2
(-2.8)
A 		1.3
(-3)
A 		23.1
(3)
A 		15.2
(0.8)
A 		22
C 11.6
(0.8)
A 		2
(-2.6)
A 		9.3
(-0)
A 		1
(-3)
A 		6.3
(-1.1)
A 		17.7
(3)
A 		17
avr 7.6
(-0.5) 		3.2
(-2.3) 		6.6
(-0.9) 		1.4
(-3) 		16.2
(3) 		13.6
(1.9) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179672_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2487
Sequence Type Exemplar sequence
Representative Public ID F49B2.4 NCBI
Target Description F49B2.4 /REP_DB=WormBase Gene ID /WP=CE16075 /TR=O45538 /GB=CAB04426.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061100
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000010607 ENSEMBL cdna:SNAP chromosome:CEL140:I:14326182:14327755:1 None
F49B2.4 ENSEMBL cdna:known chromosome:CEL140:I:14324768:14327577:1 gene:F49B2.4 None
NM_061100 NCBI Caenorhabditis elegans F49B2.4 (F49B2.4) mRNA, complete cds. None
GENEFINDER00000010613 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14319127:14328015:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14324698-14327839(+) 96.13 100.0
Public Domain and Genome References
Gene Title
Ensembl F49B2.4
Entrez Gene 186011 Entrez gene
SwissProt O45538 EMBL-EBI
WormBase CE28560 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04425 Hypothetical protein F49B2.3 [Caenorhabditis elegans] ref|NP_493500.1| F49B2.3 [Caenorhabditis elegans] 1.0E-144
blast CAB04426 Hypothetical protein F49B2.4 [Caenorhabditis elegans] ref|NP_493501.1| F49B2.4 [Caenorhabditis elegans] 8.0E-65
blast CAA16287 Hypothetical protein Y116A8B.1 [Caenorhabditis elegans] ref|NP_503053.1| Y116A8B.1 [Caenorhabditis elegans] 5.0E-36
blast CAB04426 Hypothetical protein F49B2.4 [Caenorhabditis elegans] ref|NP_493501.1| F49B2.4 [Caenorhabditis elegans] 2.0E-28
blast CAB04426 Hypothetical protein F49B2.4 [Caenorhabditis elegans] ref|NP_493501.1| F49B2.4 [Caenorhabditis elegans] 6.0E-28
blast CAB04423 Hypothetical protein F49B2.1 [Caenorhabditis elegans] ref|NP_493499.1| F49B2.1 [Caenorhabditis elegans] 2.0E-17
blast CAI70403 Hypothetical protein BE10.5 [Caenorhabditis elegans] ref|NP_001021137.1| BE10.5 [Caenorhabditis elegans] 1.0E-11
blast CAI70403 Hypothetical protein BE10.5 [Caenorhabditis elegans] ref|NP_001021137.1| BE10.5 [Caenorhabditis elegans] 1.0E-10
Sequence
Target Sequence 
>C. ELEGANS:179672_AT
ttcccaatactgtcacttcctgaaagatcccgcaaaaatgctataaaatgcatgaaactt
ttggatatagtcaacttctccttaaccactcaaaacgcaaagaattcagtgatatctgca
ggattaaaagccactgaaggtgcagttgggtcgagtaaaaaaggagagaatcgtcatgac
aagctactcgctcccggggtcccactggctcaggatgagcggactgaaaagaatcaactg
agaagcggaaaaagtgcgccaatatatgttcaagtcaataagaagaaagctacgaaacta
gctcagccggttccagtagctcaggataggaagaagaagaagaagccgagaaaagtccgc
gacgatgacaccctttcagacgtaattatattggttgaggctcacatctctcatagtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCCAATACTGTCACTTCCTGAAA 611 697 22 Antisense
TGTCACTTCCTGAAAGATCCCGCAA 403 559 32 Antisense
ATATAGTCAACTTCTCCTTAACCAC 348 19 86 Antisense
TTCTCCTTAACCACTCAAAACGCAA 324 693 97 Antisense
GGTCCCACTGGCTCAGGATGAGCGG 683 501 219 Antisense
AGTGCGCCAATATATGTTCAAGTCA 528 59 274 Antisense
TACGAAACTAGCTCAGCCGGTTCCA 38 647 312 Antisense
AGCCGGTTCCAGTAGCTCAGGATAG 696 83 326 Antisense
AGAAAAGTCCGCGACGATGACACCC 400 71 370 Antisense
GATGACACCCTTTCAGACGTAATTA 550 401 385 Antisense
GTTGAGGCTCACATCTCTCATAGTG 240 439 415 Antisense
Sequence Source Affymetrix Proprietary Database