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[179671_at]

Description C44B9.5 /REP_DB=WormBase Gene ID /WP=CE25813 /TR=Q18606 /GB=CAA97782.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 78      6grp_total > 78      4grp_total > 20      6grp_high1_sub > Cu      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 102.5
(-2.3)
P 		112.4
(-1.3)
A 		95
(-3)
A 		155.9
(3)
P 		61
B 139
(3)
P 		78.6
(-0.8)
A 		44.2
(-3)
A 		131.2
(2.5)
P 		95
C 61.1
(-3)
P 		124.8
(0.5)
A 		63.8
(-2.9)
A 		170.8
(3)
P 		110
avr 100.9
(-0.7) 		105.3
(-0.3) 		67.7
(-3) 		152.6
(3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 331
1 2 3 4 5 6 range
A 156.2
(0.3)
P 		109.9
(-1.5)
P 		69.7
(-3)
P 		168.3
(0.8)
P 		144.1
(-0.2)
P 		227.3
(3)
P 		158
B 125.6
(-1.6)
P 		94.2
(-2.5)
P 		141.4
(-1.2)
P 		78.3
(-3)
P 		199.1
(0.5)
P 		283.4
(3)
P 		205
C 79.3
(-3)
A 		112.8
(-2.4)
P 		93
(-2.7)
A 		102.1
(-2.6)
A 		179.1
(-1.1)
P 		401
(3)
P 		322
avr 120.4
(-2.4) 		105.6
(-2.9) 		101.4
(-3) 		116.2
(-2.6) 		174.1
(-0.8) 		303.9
(3) 		203
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 37.3
(3)
P 		24.4
(-2.3)
A 		24.8
(-2.2)
A 		22.8
(-3)
P 		15
B 44.3
(3)
P 		19.4
(-1.4)
A 		10.2
(-3)
A 		28
(0.1)
P 		34
C 20.2
(-3)
P 		35.9
(3)
A 		22.2
(-2.2)
A 		28.8
(0.3)
P 		16
avr 33.9
(3) 		26.6
(0) 		19.1
(-3) 		26.5
(0) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 28.8
(-1)
P 		39.1
(0.6)
P 		15.2
(-3)
P 		42.7
(1.1)
P 		43.5
(1.2)
P 		55.3
(3)
P 		40
B 43.7
(-1.4)
P 		31.4
(-2.2)
P 		34.3
(-2)
P 		20.7
(-3)
P 		80.9
(1.2)
P 		105.7
(3)
P 		85
C 29.4
(-2.5)
A 		34.4
(-2.3)
P 		23.7
(-2.8)
A 		20.5
(-3)
A 		58
(-1)
P 		134.2
(3)
P 		114
avr 34
(-2.2) 		35
(-2.1) 		24.4
(-3) 		28
(-2.7) 		60.8
(-0) 		98.4
(3) 		74
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179671_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6713
Sequence Type Exemplar sequence
Representative Public ID C44B9.5 NCBI
Target Description C44B9.5 /REP_DB=WormBase Gene ID /WP=CE25813 /TR=Q18606 /GB=CAA97782.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066997(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066997 NCBI Caenorhabditis elegans C44B9.5 (C44B9.5) mRNA, complete cds. 9/11 None
C44B9.5 ENSEMBL cdna:known chromosome:CEL140:III:10896305:10901661:1 gene:C44B9.5 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022577 8/11 Cross Hyb Matching Probes None
GENEFINDER00000022579 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10894561-10900893(+) 98.81 100.0
Public Domain and Genome References
Gene Title
Ensembl C44B9.5
Entrez Gene 176518 Entrez gene
SwissProt Q18606 EMBL-EBI
WormBase CE37755 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA97782 Hypothetical protein C44B9.5 [Caenorhabditis elegans] ref|NP_499398.2| C44B9.5 [Caenorhabditis elegans] 0.0
blast CAE71385 Hypothetical protein CBG18292 [Caenorhabditis briggsae] 1.0E-131
Sequence
Target Sequence 
>C. ELEGANS:179671_AT
agaagccagaattcgactatccatcgtcgccaatcacacttcacgatgagcaggaggagc
aggatctgaaattgagaacacccgagcgaaagactctgcaaaacgaagaggcgcagagaa
aacaattcggacgccacatgtcagaacgtgaacaactcatgaaacaactggtagatcaaa
agtttcgagaagagcgagagaatggagatttagagagtcgaagggctcaattgaaggatg
gacaagtgattcggaataaggaaatgaggaagaatttgatgcacggagccgcgtgcaagt
gttgtagagcttattatgatggtctcgagatggatgaaaaggagaaggaacagtatatta
atcaggtgcatattataagactgccctggaattttcaagaaatttggagtgaaattttcg
gaaattcagtcaaaactctatataaccaaattttttcaaggtttttaaaaaatcgaatat
ttcaatttgggttttccaatttttatatttttattttccagttagctcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGCCAGAATTCGACTATCCATC 91 75 2165 Antisense
TTCGACTATCCATCGTCGCCAATCA 575 695 2176 Antisense
TCGCCAATCACACTTCACGATGAGC 288 599 2191 Antisense
GAACACCCGAGCGAAAGACTCTGCA 78 353 2240 Antisense
GAAAACAATTCGGACGCCACATGTC 145 355 2282 Antisense
GGACGCCACATGTCAGAACGTGAAC 203 523 2293 Antisense
AAGAATTTGATGCACGGAGCCGCGT 533 151 2434 Antisense
GGAGCCGCGTGCAAGTGTTGTAGAG 591 521 2449 Antisense
AGCTTATTATGATGGTCTCGAGATG 281 79 2472 Antisense
ATAAGACTGCCCTGGAATTTTCAAG 615 23 2539 Antisense
TATTTTTATTTTCCAGTTAGCTCCA 599 661 2670 Antisense
Sequence Source Affymetrix Proprietary Database