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[179670_at]

Description C14A6.8 /REP_DB=WormBase Gene ID /WP=CE18499 /TR=Q9XVD8 /GB=CAB03885.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 24.7
(-3)
P 		24.6
(-3)
A 		42.6
(-0.8)
P 		72.7
(3)
P 		48
B 44.2
(3)
P 		43.5
(2.9)
M 		14.5
(-3)
A 		39.6
(2.1)
A 		30
C 38.8
(-2.5)
A 		33.7
(-3)
A 		35.7
(-2.8)
P 		90.7
(3)
P 		57
avr 35.9
(-2.2) 		33.9
(-2.5) 		30.9
(-3) 		67.7
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 4.7
(-2.5)
A 		1.9
(-2.9)
A 		40.8
(3)
P 		36.9
(2.4)
A 		40.3
(2.9)
A 		1.1
(-3)
A 		40
B 30.6
(-0.1)
A 		43.9
(3)
A 		28.7
(-0.5)
P 		18.2
(-3)
A 		40.3
(2.2)
A 		24.1
(-1.6)
A 		26
C 16.2
(-1.2)
A 		38.1
(3)
P 		34.7
(2.4)
A 		6.7
(-3)
A 		10.2
(-2.3)
A 		21.5
(-0.2)
A 		31
avr 17.2
(-2.5) 		28
(0.9) 		34.7
(3) 		20.6
(-1.4) 		30.3
(1.6) 		15.6
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 9
(0.8)
P 		5.3
(-3)
A 		11.1
(3)
P 		10.6
(2.5)
P 		6
B 14.1
(3)
P 		10.8
(1.1)
M 		3.4
(-3)
A 		8.4
(-0.2)
A 		11
C 12.9
(0.4)
A 		9.7
(-3)
A 		12.4
(-0.1)
P 		15.3
(3)
P 		6
avr 12
(3) 		8.6
(-3) 		9
(-2.3) 		11.4
(1.9) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 0.9
(-2.7)
A 		0.7
(-2.8)
A 		8.9
(1.4)
P 		9.4
(1.6)
A 		12.1
(3)
A 		0.3
(-3)
A 		12
B 10.6
(0)
A 		14.6
(2.1)
A 		7
(-1.9)
P 		4.8
(-3)
A 		16.4
(3)
A 		9
(-0.8)
A 		12
C 6
(-0.3)
A 		11.6
(3)
P 		8.8
(1.4)
A 		1.3
(-3)
A 		3.3
(-1.8)
A 		7.2
(0.4)
A 		10
avr 5.8
(-2.3) 		9
(1.2) 		8.2
(0.3) 		5.2
(-3) 		10.6
(3) 		5.5
(-2.7) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179670_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14481
Sequence Type Exemplar sequence
Representative Public ID C14A6.8 NCBI
Target Description C14A6.8 /REP_DB=WormBase Gene ID /WP=CE18499 /TR=Q9XVD8 /GB=CAB03885.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075150(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075150 NCBI Caenorhabditis elegans C14A6.8 (C14A6.8) mRNA, complete cds. 11/11 None
C14A6.8 ENSEMBL cdna:known chromosome:CEL140:V:18171661:18174192:-1 gene:C14A6.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009397 8/11 Cross Hyb Matching Probes None
GENEFINDER00000009405 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18171660-18174192(-) 94.62 100.0
Public Domain and Genome References
Gene Title
Ensembl C14A6.8
Entrez Gene 182589 Entrez gene
SwissProt Q9XVD8 EMBL-EBI
WormBase CE18499 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03885 Hypothetical protein C14A6.8 [Caenorhabditis elegans] ref|NP_507551.1| C14A6.8 [Caenorhabditis elegans] 1.0E-53
blast AAK73929 Hypothetical protein Y71G12B.3 [Caenorhabditis elegans] ref|NP_490899.1| Y71G12B.3 [Caenorhabditis elegans] 7.0E-29
blast CAA16326 Hypothetical protein Y39E4A.1 [Caenorhabditis elegans] ref|NP_499690.1| Y39E4A.1 [Caenorhabditis elegans] 2.0E-15
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507551.1 1 98-120
C14A6.8 1 98-120
Sequence
Target Sequence 
>C. ELEGANS:179670_AT
gaaatccgacggcaatgagtatcaaaatctagcgattctggatccaaatgcgccggcagt
cggaggaaacgaaccaccaccaccaccaccaccgctgacagttgctcaagacgcacttat
ttcggataatggagcaaaagtgacaagtggtgatggagttcagaagttgcccgaatcgaa
tccatcgctcaagaagccaagaggcaataaggcaaaaatcaaaaagttgaagaacaagat
caaaaacgtgaaaattttcttctggacaatgatcggcatttgggttatttgtctgtgttt
ctttgttcttatttatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATCCGACGGCAATGAGTATCAA 657 361 51 Antisense
AAATCTAGCGATTCTGGATCCAAAT 277 117 75 Antisense
TGCGCCGGCAGTCGGAGGAAACGAA 181 583 99 Antisense
CCACCGCTGACAGTTGCTCAAGACG 22 275 139 Antisense
GCTCAAGACGCACTTATTTCGGATA 581 301 154 Antisense
GGAGTTCAGAAGTTGCCCGAATCGA 298 517 205 Antisense
CCCGAATCGAATCCATCGCTCAAGA 587 259 220 Antisense
CCATCGCTCAAGAAGCCAAGAGGCA 377 271 232 Antisense
GATCGGCATTTGGGTTATTTGTCTG 136 419 321 Antisense
TATTTGTCTGTGTTTCTTTGTTCTT 542 661 336 Antisense
TGTGTTTCTTTGTTCTTATTTATCT 368 555 344 Antisense
Sequence Source Affymetrix Proprietary Database