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[179669_at]

Description R08A2.5 /REP_DB=WormBase Gene ID /WP=CE23906 /TR=Q9U394 /GB=CAB57903.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 42      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 263
1 2 3 4 range
A 98.1
(-0.6)
P 		197.9
(3)
P 		171.4
(2)
A 		31
(-3)
A 		167
B 59.2
(-3)
A 		238.1
(3)
P 		159.2
(0.4)
P 		76.5
(-2.4)
A 		179
C 109.2
(-3)
A 		293.8
(3)
P 		125.7
(-2.5)
P 		126
(-2.5)
A 		185
avr 88.8
(-2.6) 		243.3
(3) 		152.1
(-0.3) 		77.8
(-3) 		166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 183.8
(3)
P 		173.9
(2.5)
P 		143.5
(0.8)
A 		134.3
(0.3)
A 		147.9
(1)
A 		73.8
(-3)
A 		110
B 187.7
(3)
P 		179.8
(2.5)
P 		105.3
(-2.1)
A 		148.7
(0.6)
M 		134.6
(-0.3)
P 		90.2
(-3)
A 		98
C 123.4
(-3)
M 		204.2
(3)
P 		126.5
(-2.8)
A 		179.3
(1.2)
A 		130.3
(-2.5)
A 		127.5
(-2.7)
A 		81
avr 165
(1.6) 		186
(3) 		125.1
(-1.1) 		154.1
(0.8) 		137.6
(-0.3) 		97.2
(-3) 		89
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 35.7
(1.6)
P 		43
(2.7)
P 		44.8
(3)
A 		4.5
(-3)
A 		40
B 18.9
(-2.6)
A 		58.8
(3)
P 		36.9
(-0.1)
P 		16.3
(-3)
A 		43
C 36.1
(-1.6)
A 		84.5
(3)
P 		43.8
(-0.9)
P 		21.2
(-3)
A 		63
avr 30.2
(-1) 		62.1
(3) 		41.8
(0.5) 		14
(-3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 33.9
(-0.8)
P 		61.8
(3)
P 		31.3
(-1.2)
A 		34.1
(-0.8)
A 		44.6
(0.6)
A 		18
(-3)
A 		44
B 65.3
(3)
P 		59.9
(2.2)
P 		25.6
(-3)
A 		39.4
(-0.9)
M 		54.7
(1.4)
P 		33.6
(-1.8)
A 		40
C 45.8
(-0.3)
M 		62.3
(3)
P 		32.2
(-3)
A 		36.1
(-2.2)
A 		42.2
(-1)
A 		42.7
(-0.9)
A 		30
avr 48.3
(0.5) 		61.3
(3) 		29.7
(-3) 		36.5
(-1.7) 		47.2
(0.3) 		31.4
(-2.7) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179669_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12788
Sequence Type Exemplar sequence
Representative Public ID R08A2.5 NCBI
Target Description R08A2.5 /REP_DB=WormBase Gene ID /WP=CE23906 /TR=Q9U394 /GB=CAB57903.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074230(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074230 NCBI Caenorhabditis elegans R08A2.5 (R08A2.5) mRNA, complete cds. 11/11 None
SNAP00000001285 ENSEMBL cdna:SNAP chromosome:CEL140:V:14715325:14716561:1 11/11 None
GENEFINDER00000001290 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14715220:14716561:1 11/11 None
R08A2.5 ENSEMBL cdna:known chromosome:CEL140:V:14715220:14716561:1 gene:R08A2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14715219-14716561(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R08A2.5
Entrez Gene 187694 Entrez gene
SwissProt Q9U394 EMBL-EBI
WormBase CE23906 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB57903 Hypothetical protein R08A2.5 [Caenorhabditis elegans] ref|NP_506631.1| R08A2.5 [Caenorhabditis elegans] 1.0E-150
blast CAB57903 Hypothetical protein R08A2.5 [Caenorhabditis elegans] ref|NP_506631.1| R08A2.5 [Caenorhabditis elegans] 1.0E-139
blast CAE60847 Hypothetical protein CBG04556 [Caenorhabditis briggsae] 1.0E-114
blast CAE60847 Hypothetical protein CBG04556 [Caenorhabditis briggsae] 1.0E-106
Sequence
Target Sequence 
>C. ELEGANS:179669_AT
gacagttctcaacgactcaacttcttcaccattcgaattctcctatctctccaccgacag
ccaacgaaaatcaataattggtcatgtatcccgtgcctcttccacacaactaactctcca
tctcgcatccataatagacattccatttctagttgttcaggcctcaccgactttcctgat
tctctctcaaactgatactattccaacttcatgtgaaagtttcctagttctcgagagaaa
tcctacaactactgtatcattagaaacgtcacaagctctttcagaactcggtgcaaactc
tgcatcgaatccaattatatctatgaatagttgtaatgatcttccttccaaaataccgtc
agagtctaactctataattaaaccagcttcccaagtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAGTTCTCAACGACTCAACTTCT 408 369 456 Antisense
CAACTTCTTCACCATTCGAATTCTC 420 189 473 Antisense
TCTCCACCGACAGCCAACGAAAATC 373 595 503 Antisense
AATAATTGGTCATGTATCCCGTGCC 41 171 528 Antisense
CTCTCCATCTCGCATCCATAATAGA 582 231 569 Antisense
CCTGATTCTCTCTCAAACTGATACT 234 267 630 Antisense
GTGAAAGTTTCCTAGTTCTCGAGAG 584 481 668 Antisense
GTCACAAGCTCTTTCAGAACTCGGT 302 465 723 Antisense
GAACTCGGTGCAAACTCTGCATCGA 443 349 739 Antisense
AATGATCTTCCTTCCAAAATACCGT 695 161 790 Antisense
ATAATTAAACCAGCTTCCCAAGTGA 373 7 829 Antisense
Sequence Source Affymetrix Proprietary Database