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[179668_at]

Description T04B2.4 /REP_DB=WormBase Gene ID /WP=CE03611 /TR=Q22148 /GB=CAA92611.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 21      6grp_cgc > 87      6grp_cgc_sub > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 31
(0.2)
A 		24.1
(-0.6)
A 		3.4
(-3)
A 		54.5
(3)
A 		51
B 26.6
(2.3)
A 		9.2
(-3)
A 		17.6
(-0.4)
A 		28.9
(3)
A 		20
C 37.7
(3)
A 		18.2
(-0.3)
A 		1.7
(-3)
A 		25.3
(0.9)
A 		36
avr 31.8
(2.1) 		17.2
(-1) 		7.6
(-3) 		36.2
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 4.2
(-2.9)
A 		7.1
(-2.6)
A 		50.6
(3)
A 		38.5
(1.5)
A 		26.9
(-0)
A 		3.6
(-3)
A 		47
B 14.8
(-1.8)
A 		22.1
(-0.9)
A 		5.4
(-3)
A 		46.7
(2.2)
A 		53.1
(3)
A 		41.9
(1.6)
A 		48
C 14.7
(-1.5)
A 		42.4
(3)
A 		5.7
(-3)
A 		9.8
(-2.3)
A 		15.9
(-1.3)
A 		23.4
(-0.1)
A 		37
avr 11.2
(-3) 		23.9
(0.7) 		20.6
(-0.3) 		31.7
(2.9) 		32
(3) 		23
(0.4) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 11.3
(3)
A 		5.2
(-0.5)
A 		0.9
(-3)
A 		8
(1.1)
A 		10
B 8.5
(3)
A 		2.3
(-3)
A 		4.1
(-1.3)
A 		6.1
(0.7)
A 		6
C 12.5
(3)
A 		5.2
(-0.7)
A 		0.6
(-3)
A 		4.3
(-1.1)
A 		12
avr 10.8
(3) 		4.2
(-1.4) 		1.9
(-3) 		6.1
(-0.2) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 0.8
(-3)
A 		2.5
(-2)
A 		11
(3)
A 		9.8
(2.3)
A 		8.1
(1.3)
A 		0.9
(-2.9)
A 		10
B 5.2
(-1.8)
A 		7.3
(-1.2)
A 		1.3
(-3)
A 		12.4
(0.3)
A 		21.6
(3)
A 		15.6
(1.2)
A 		20
C 5.4
(-0.9)
A 		12.9
(3)
A 		1.4
(-3)
A 		2
(-2.7)
A 		5.1
(-1.1)
A 		7.8
(0.3)
A 		12
avr 3.8
(-3) 		7.6
(-0.1) 		4.6
(-2.4) 		8.1
(0.3) 		11.6
(3) 		8.1
(0.3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179668_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9802
Sequence Type Exemplar sequence
Representative Public ID T04B2.4 NCBI
Target Description T04B2.4 /REP_DB=WormBase Gene ID /WP=CE03611 /TR=Q22148 /GB=CAA92611.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182309
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182309 NCBI Caenorhabditis elegans T04B2.7 (T04B2.7) mRNA, complete cds. None
SNAP00000005417 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10054008:10056079:-1 None
GENEFINDER00000005426 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10054008:10055683:-1 None
T04B2.7 ENSEMBL cdna:known chromosome:CEL140:IV:10054008:10055683:-1 gene:T04B2.7 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_069419 5/11 Cross Hyb Matching Probes None
NM_001028185 5/11 Cross Hyb Matching Probes None
SNAP00000005416 5/11 Cross Hyb Matching Probes None
GENEFINDER00000005419 5/11 Cross Hyb Matching Probes None
GENEFINDER00000005422 4/11 Cross Hyb Matching Probes None
T04B2.8 5/11 Cross Hyb Matching Probes None
T04B2.4 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10050891-10055990(-) 92.92 100.0
Public Domain and Genome References
Gene Title
Ensembl T04B2.7
Entrez Gene 353431 Entrez gene
SwissProt Q86GC1 EMBL-EBI
WormBase CE36499 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD60422 Hypothetical protein T04B2.7 [Caenorhabditis elegans] ref|NP_872109.2| T04B2.7 [Caenorhabditis elegans] 1.0E-148
blast CAD60422 Hypothetical protein T04B2.7 [Caenorhabditis elegans] ref|NP_872109.2| T04B2.7 [Caenorhabditis elegans] 1.0E-146
blast CAE67333 Hypothetical protein CBG12795 [Caenorhabditis briggsae] 3.0E-72
blast CAE67333 Hypothetical protein CBG12795 [Caenorhabditis briggsae] 7.0E-72
blast AAB96696 Hypothetical protein F33D11.2 [Caenorhabditis elegans] ref|NP_491696.1| F33D11.2 [Caenorhabditis elegans] 1.0E-67
Sequence
Target Sequence 
>C. ELEGANS:179668_AT
tttccacttttttcaatccaactcagctattccgcaacgaacaaaatggaattgtgccaa
agtttttgaatgtaacaatgacaaacatatttttcgtaattggtggtgtgtttttatttg
taaattgtttgtttctagttctaacctactgttatttatttatagttcttcatgaaagaa
ataagaaaacaccgccccgaccaacgcgacatatatcaaaacgaaaagagctagcaagga
tgagagaagcaaaactattcaccatgagtacaattacagtttgtgttcaaatgtccgttt
tactactttttatttttggaggatctgatattttgggattttctactgatcagttttata
tggtttataatgcattgagaccatttgtgaacactttctctaaagtttcagctgaagttt
ttgaatcaactgactatattttgacagaaagattgttgtacaagaaaaaaacaataatga
gtttcgtcatatttggcctggaagctttgaacacattttattttaacctcgtctttttgt
gtggatttttgggatatttagtgtttaattgtggtgtttgtgacaccgcttctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCCACTTTTTTCAATCCAACTCA 600 669 1463 Antisense
ACTCAGCTATTCCGCAACGAACAAA 556 97 1483 Antisense
GTTTGTTTCTAGTTCTAACCTACTG 154 451 1589 Antisense
CCCGACCAACGCGACATATATCAAA 24 261 1658 Antisense
GTGTTCAAATGTCCGTTTTACTACT 52 471 1745 Antisense
GACCATTTGTGAACACTTTCTCTAA 379 383 1841 Antisense
TGAGTTTCGTCATATTTGGCCTGGA 646 563 1940 Antisense
ATTTGGCCTGGAAGCTTTGAACACA 82 19 1953 Antisense
TGAACACATTTTATTTTAACCTCGT 520 573 1970 Antisense
TAACCTCGTCTTTTTGTGTGGATTT 436 637 1986 Antisense
TGTGGTGTTTGTGACACCGCTTCTC 284 555 2032 Antisense
Sequence Source Affymetrix Proprietary Database