[Home] | [Total List]

[179667_at]

Description ZK666.1 /REP_DB=WormBase Gene ID /WP=CE02386 /TR=Q23559 /GB=CAA88981.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 30.8
(2.2)
A 		6.6
(-3)
A 		8.7
(-2.5)
A 		34.5
(3)
A 		28
B 47.9
(1.5)
A 		61.2
(3)
A 		9.1
(-3)
A 		46.2
(1.3)
A 		52
C 5.6
(-3)
A 		59.1
(0.7)
A 		10.2
(-2.7)
A 		91.4
(3)
A 		86
avr 28.1
(-0.7) 		42.3
(1.1) 		9.3
(-3) 		57.4
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 11
(1.3)
A 		5.7
(-1.4)
A 		8.1
(-0.2)
A 		2.6
(-3)
A 		14.2
(3)
A 		7
(-0.7)
A 		12
B 8.1
(-2.4)
A 		29.7
(3)
A 		13.6
(-1)
A 		5.7
(-3)
A 		12.3
(-1.4)
A 		16.2
(-0.4)
A 		24
C 4
(-3)
A 		38.3
(1.2)
A 		6.8
(-2.7)
A 		53.1
(3)
A 		19.1
(-1.2)
A 		37.9
(1.1)
A 		49
avr 7.7
(-3) 		24.6
(3) 		9.5
(-2.4) 		20.5
(1.5) 		15.2
(-0.3) 		20.4
(1.5) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 11.2
(3)
A 		1.4
(-3)
A 		2.3
(-2.4)
A 		5.1
(-0.7)
A 		10
B 15.3
(3)
A 		15.1
(2.9)
A 		2.1
(-3)
A 		9.9
(0.5)
A 		13
C 1.9
(-3)
A 		17
(3)
A 		3.5
(-2.4)
A 		15.4
(2.4)
A 		15
avr 9.5
(1.8) 		11.2
(3) 		2.6
(-3) 		10.1
(2.2) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2
(-0.8)
A 		2
(-0.8)
A 		1.8
(-1.2)
A 		0.7
(-3)
A 		4.3
(3)
A 		1.7
(-1.3)
A 		4
B 2.8
(-2.1)
A 		9.9
(3)
A 		3.3
(-1.7)
A 		1.5
(-3)
A 		5
(-0.5)
A 		6.1
(0.3)
A 		8
C 1.5
(-3)
A 		11.7
(2.5)
A 		1.7
(-2.9)
A 		10.7
(1.9)
A 		6.2
(-0.5)
A 		12.7
(3)
A 		11
avr 2.1
(-3) 		7.9
(3) 		2.3
(-2.8) 		4.3
(-0.7) 		5.2
(0.2) 		6.8
(1.9) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179667_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2679
Sequence Type Exemplar sequence
Representative Public ID ZK666.1 NCBI
Target Description ZK666.1 /REP_DB=WormBase Gene ID /WP=CE02386 /TR=Q23559 /GB=CAA88981.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063852(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063852 NCBI Caenorhabditis elegans ZK666.1 (ZK666.1) mRNA, complete cds. 11/11 None
SNAP00000005231 ENSEMBL cdna:SNAP chromosome:CEL140:II:10469450:10471257:-1 11/11 None
GENEFINDER00000005245 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10470844:10471257:-1 11/11 None
ZK666.1 ENSEMBL cdna:known chromosome:CEL140:II:10470844:10471257:-1 gene:ZK666.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10470840-10471254(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK666.1
Entrez Gene 191379 Entrez gene
SwissProt Q23559 EMBL-EBI
WormBase CE02386 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88991 Hypothetical protein ZK673.9 [Caenorhabditis elegans] emb|CAA88487.1| Hypothetical protein ZK673.9 [Caenorhabditis elegans] ref|NP_496252.1| ZK673.9 [Caenorhabditis elegans] 7.0E-82
blast CAA88981 Hypothetical protein ZK666.1 [Caenorhabditis elegans] ref|NP_496253.1| ZK666.1 [Caenorhabditis elegans] 1.0E-65
blast CAA88981 Hypothetical protein ZK666.1 [Caenorhabditis elegans] ref|NP_496253.1| ZK666.1 [Caenorhabditis elegans] 2.0E-63
blast CAE59678 Hypothetical protein CBG03101 [Caenorhabditis briggsae] 9.0E-58
blast CAA88484 Hypothetical protein ZK673.10 [Caenorhabditis elegans] ref|NP_496250.1| ZK673.10 [Caenorhabditis elegans] 7.0E-50
blast CAA88983 Hypothetical protein ZK666.4 [Caenorhabditis elegans] ref|NP_496257.1| ZK666.4 [Caenorhabditis elegans] 5.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 4.8E-21
Sequence
Target Sequence 
>C. ELEGANS:179667_AT
catctttcgccctttacaacaatgctgatatgttccaattcttccctcgtaataagcgtc
tcagtactcatcagaaatcttgccttgatgagcatgctcggaaaatggctgttttcatga
tgaagcgacaagaagagtaccgttactacgagaacttggccaatcaggaacagttctccg
atgatgcccacttcagcgacaatggaatggattcaggattctgcagtggagcgacatcaa
ctggacaatcagcttctacatctcctgctccagttcagctcattccaaatccattcttcg
atccagaagccaagactcaatctccagtgaaactcgttgacaatccagagctattcatgg
aatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCTTTCGCCCTTTACAACAATGC 417 213 32 Antisense
GATGCCCACTTCAGCGACAATGGAA 297 415 214 Antisense
GCCCACTTCAGCGACAATGGAATGG 273 287 217 Antisense
ATTCTGCAGTGGAGCGACATCAACT 603 7 249 Antisense
TGGAGCGACATCAACTGGACAATCA 198 549 258 Antisense
TTCCAAATCCATTCTTCGATCCAGA 661 699 314 Antisense
AAATCCATTCTTCGATCCAGAAGCC 170 119 318 Antisense
TCCAGAAGCCAAGACTCAATCTCCA 123 591 333 Antisense
AGAAGCCAAGACTCAATCTCCAGTG 115 73 336 Antisense
AACTCGTTGACAATCCAGAGCTATT 656 141 362 Antisense
CAATCCAGAGCTATTCATGGAATCC 63 183 372 Antisense
Sequence Source Affymetrix Proprietary Database