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[179666_at]

Description W02D9.9 /REP_DB=WormBase Gene ID /WP=CE14470 /TR=Q9XVG6 /GB=CAB03467.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 39      6grp_total > 19      4grp_total > 0      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 69.5
(-3)
A 		87.1
(-0.1)
P 		106.1
(3)
P 		100.9
(2.1)
M 		37
B 64.7
(-0)
A 		54.4
(-3)
M 		75.3
(3)
P 		56.3
(-2.5)
P 		21
C 107.6
(3)
A 		80.7
(-1.3)
P 		70.1
(-3)
P 		102.4
(2.2)
P 		38
avr 80.6
(0.1) 		74.1
(-3) 		83.8
(1.7) 		86.5
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 88.1
(3)
A 		30.1
(-3)
A 		45.5
(-1.4)
P 		51.3
(-0.8)
P 		74.7
(1.6)
P 		74
(1.5)
P 		58
B 99.7
(3)
P 		73.9
(0.4)
P 		71.3
(0.2)
A 		55.6
(-1.4)
P 		69.2
(-0)
P 		39.7
(-3)
A 		60
C 93
(3)
P 		51.7
(-2)
A 		90.1
(2.7)
A 		43.1
(-3)
A 		57.1
(-1.3)
P 		84.5
(2)
P 		50
avr 93.6
(3) 		51.9
(-2.7) 		69
(-0.4) 		50
(-3) 		67
(-0.7) 		66.1
(-0.8) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 25.3
(1.9)
A 		18.9
(-1.1)
P 		27.7
(3)
P 		14.8
(-3)
M 		13
B 20.6
(3)
A 		13.4
(-2)
M 		17.4
(0.8)
P 		12
(-3)
P 		9
C 35.6
(3)
A 		23.2
(-1.1)
P 		24.4
(-0.7)
P 		17.3
(-3)
P 		18
avr 27.2
(3) 		18.5
(-1.2) 		23.2
(1.1) 		14.7
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 16.2
(-0)
A 		10.7
(-2.6)
A 		9.9
(-3)
P 		13
(-1.5)
P 		22.6
(3)
P 		18
(0.8)
P 		13
B 34.7
(3)
P 		24.6
(-0)
P 		17.3
(-2.2)
A 		14.7
(-3)
P 		28.1
(1)
P 		14.8
(-3)
A 		20
C 34.5
(3)
P 		15.8
(-1.3)
A 		22.9
(0.3)
A 		8.7
(-3)
A 		18.5
(-0.7)
P 		28.3
(1.6)
P 		26
avr 28.5
(3) 		17
(-1.2) 		16.7
(-1.3) 		12.1
(-3) 		23.1
(1) 		20.4
(0) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179666_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1064
Sequence Type Exemplar sequence
Representative Public ID W02D9.9 NCBI
Target Description W02D9.9 /REP_DB=WormBase Gene ID /WP=CE14470 /TR=Q9XVG6 /GB=CAB03467.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060780(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060780 NCBI Caenorhabditis elegans W02D9.9 (W02D9.9) mRNA, complete cds. 11/11 None
GENEFINDER00000003943 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12565285:12567015:1 11/11 None
W02D9.9 ENSEMBL cdna:known chromosome:CEL140:I:12565285:12565599:1 gene:W02D9.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12565215-12565530(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W02D9.9
Entrez Gene 189123 Entrez gene
SwissProt Q9XVG6 EMBL-EBI
WormBase CE14470 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03467 Hypothetical protein W02D9.9 [Caenorhabditis elegans] ref|NP_493181.1| W02D9.9 [Caenorhabditis elegans] 7.0E-36
blast CAB03467 Hypothetical protein W02D9.9 [Caenorhabditis elegans] ref|NP_493181.1| W02D9.9 [Caenorhabditis elegans] 3.0E-30
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493181.1 2 10-32,53-72
W02D9.9 2 10-32,53-72
GENEFINDER00000003943 2 10-32,57-79
Sequence
Target Sequence 
>C. ELEGANS:179666_AT
tgtcggaaaaatcctcctcctatcactcttctatcatttggccgttttcctttgtgcctg
ctccgtctgtgcatcggtctacttgaacgtcgacaacgtggaggagagagttcgcaatgc
tcgtatgcgggaatcgaggaaggccgccagacggcatactctcatccttttcttcgcaat
atgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCGGAAAAATCCTCCTCCTATCA 540 557 21 Antisense
TCCTATCACTCTTCTATCATTTGGC 61 593 38 Antisense
TATCATTTGGCCGTTTTCCTTTGTG 312 659 52 Antisense
TCCGTCTGTGCATCGGTCTACTTGA 323 595 82 Antisense
TGTGCATCGGTCTACTTGAACGTCG 332 557 88 Antisense
CGGTCTACTTGAACGTCGACAACGT 100 241 95 Antisense
GACAACGTGGAGGAGAGAGTTCGCA 261 365 112 Antisense
GAGTTCGCAATGCTCGTATGCGGGA 520 397 128 Antisense
CGTATGCGGGAATCGAGGAAGGCCG 196 245 142 Antisense
AGGAAGGCCGCCAGACGGCATACTC 626 53 157 Antisense
TCTCATCCTTTTCTTCGCAATATGG 217 613 180 Antisense
Sequence Source Affymetrix Proprietary Database