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[179665_at]

Description C18D4.7 /REP_DB=WormBase Gene ID /WP=CE15636 /TR=O45264 /GB=CAB03904.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 01      6grp_cgc > 45      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 22.1
(-1.7)
A 		10.6
(-3)
A 		28
(-1.1)
A 		64.5
(3)
A 		54
B 8.7
(-2.6)
A 		8
(-2.9)
A 		7.6
(-3)
A 		25.5
(3)
A 		18
C 20.3
(3)
P 		18.7
(2)
A 		10.5
(-3)
A 		19.7
(2.6)
A 		10
avr 17
(-1.9) 		12.4
(-3) 		15.4
(-2.3) 		36.6
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 2.3
(-1.7)
A 		1.7
(-2.2)
A 		7.8
(2.8)
A 		0.7
(-3)
A 		7.2
(2.3)
A 		8
(3)
A 		7
B 21.4
(2.6)
A 		19.1
(1.9)
A 		22.5
(3)
A 		5
(-2.7)
A 		13.1
(-0.1)
A 		4.1
(-3)
A 		18
C 2.2
(-3)
A 		14.8
(1.5)
A 		16.3
(2.1)
A 		4.7
(-2.1)
A 		9
(-0.6)
A 		18.9
(3)
A 		17
avr 8.6
(-0.5) 		11.9
(1.2) 		15.5
(3) 		3.5
(-3) 		9.8
(0.2) 		10.3
(0.4) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 8
(1.8)
A 		2.3
(-3)
A 		7.3
(1.2)
A 		9.4
(3)
A 		7
B 2.8
(-1.3)
A 		2
(-2.7)
A 		1.8
(-3)
A 		5.4
(3)
A 		4
C 6.7
(3)
P 		5.4
(0.7)
A 		3.7
(-2.3)
A 		3.3
(-3)
A 		3
avr 5.8
(2.6) 		3.2
(-3) 		4.3
(-0.6) 		6
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.4
(-2.4)
A 		0.6
(-1.8)
A 		1.7
(1.5)
A 		0.2
(-3)
A 		2.2
(3)
A 		2
(2.4)
A 		2
B 7.4
(3)
A 		6.4
(2)
A 		5.5
(1.1)
A 		1.3
(-3)
A 		5.3
(0.9)
A 		1.5
(-2.8)
A 		6
C 0.8
(-3)
A 		4.5
(1)
A 		4.1
(0.6)
A 		0.9
(-2.9)
A 		2.9
(-0.7)
A 		6.3
(3)
A 		6
avr 2.9
(1.2) 		3.8
(3) 		3.8
(3) 		0.8
(-3) 		3.5
(2.4) 		3.3
(2) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179665_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14650
Sequence Type Exemplar sequence
Representative Public ID C18D4.7 NCBI
Target Description C18D4.7 /REP_DB=WormBase Gene ID /WP=CE15636 /TR=O45264 /GB=CAB03904.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C18D4.7 ENSEMBL cdna:pseudogene chromosome:CEL140:V:17545295:17546684:1 gene:C18D4.7 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17545294-17546570(+) 100.0 100.0
Public Domain and Genome References
Ensembl C18D4.7
Sequence
Target Sequence 
>C. ELEGANS:179665_AT
cattttttggactgctttttgtaatattttgtgcacttttgccagagcattttcttccag
gaaacggctatgagaaaatctggctgcttccaattgcaattgccataatcccaatatgta
tctatactcagtacattataactcaagttttccacctgatcacattaattctgtctctgg
aaagattcatcgtgtatttcttcccagattctgaaaaatctgtaaacaccgtgcaaattg
tcgtttttcaacatatttatatagtttacggtgcttttattggcaaggacgccggcttgc
tgcttttcttgtttttttggaaaaaaatatttcttttactttctataggttttgtatata
gtgataaacggatgtgtgattttatctgccatattgtatatcccaataatgatcagtgta
cggaagttatcaaatttagcatcagctcaggagaatacgccgcaaaattacatatttttg
cagactatcgccgtgattgtgttcaaattgggttatttccggtgatacttctagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTTTTTGGACTGCTTTTTGTAAT 128 215 233 Antisense
GAAAATCTGGCTGCTTCCAATTGCA 679 353 306 Antisense
CCAATTGCAATTGCCATAATCCCAA 488 275 322 Antisense
ATAATCCCAATATGTATCTATACTC 1 25 337 Antisense
ACCTGATCACATTAATTCTGTCTCT 151 89 386 Antisense
TTCTGTCTCTGGAAAGATTCATCGT 682 693 401 Antisense
ACGGATGTGTGATTTTATCTGCCAT 63 97 600 Antisense
TTATCTGCCATATTGTATATCCCAA 619 679 614 Antisense
AAGTTATCAAATTTAGCATCAGCTC 121 157 656 Antisense
CTATCGCCGTGATTGTGTTCAAATT 386 221 717 Antisense
GGTTATTTCCGGTGATACTTCTAGC 294 503 743 Antisense
Sequence Source Affymetrix Proprietary Database