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[179664_s_at]

Description F01D4.5 /REP_DB=WormBase Gene ID /WP=CE23625 /TR=O17753 /GB=CAB02880.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 78      4grp_high_8_8 > 49      6grp_total > 78      4grp_total > 61      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 140.7
(-3)
P 		182.1
(3)
A 		145.1
(-2.4)
P 		145.8
(-2.3)
A 		41
B 154.3
(-0.3)
P 		172.7
(1.6)
P 		186.6
(3)
P 		128.5
(-3)
A 		58
C 205.9
(3)
P 		132.8
(-3)
P 		140.8
(-2.3)
P 		140.6
(-2.4)
P 		73
avr 167
(3) 		162.5
(2.1) 		157.5
(1) 		138.3
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 236
1 2 3 4 5 6 range
A 86.7
(-3)
A 		116.6
(-0.7)
A 		162.8
(2.8)
P 		136.4
(0.8)
P 		149.5
(1.8)
P 		166
(3)
P 		79
B 175.8
(-1.1)
P 		143.2
(-2)
P 		151.7
(-1.8)
P 		109.4
(-3)
P 		208.6
(-0.2)
P 		321.4
(3)
P 		212
C 155.9
(-0.8)
P 		85.9
(-3)
P 		141
(-1.3)
P 		99.9
(-2.6)
A 		157.6
(-0.8)
P 		279.9
(3)
P 		194
avr 139.5
(-2) 		115.2
(-3) 		151.8
(-1.4) 		115.2
(-3) 		171.9
(-0.6) 		255.8
(3) 		141
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 51.2
(3)
P 		39.5
(0.7)
A 		37.9
(0.3)
P 		21.3
(-3)
A 		30
B 49.2
(3)
P 		42.7
(1.2)
P 		43.2
(1.3)
P 		27.4
(-3)
A 		22
C 68.2
(3)
P 		38.2
(-1)
P 		49.1
(0.4)
P 		23.7
(-3)
P 		45
avr 56.2
(3) 		40.1
(-0) 		43.4
(0.6) 		24.1
(-3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 16
(-3)
A 		41.5
(2.3)
A 		35.4
(1)
P 		34.6
(0.8)
P 		45.1
(3)
P 		40.4
(2)
P 		29
B 61.2
(-0.9)
P 		47.7
(-1.8)
P 		36.8
(-2.5)
P 		29
(-3)
P 		84.8
(0.7)
P 		119.8
(3)
P 		91
C 57.8
(0.1)
P 		26.2
(-2.5)
P 		35.9
(-1.7)
P 		20.1
(-3)
A 		51
(-0.5)
P 		93.7
(3)
P 		74
avr 45
(-1.2) 		38.5
(-1.9) 		36
(-2.1) 		27.9
(-3) 		60.3
(0.4) 		84.6
(3) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179664_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8848
Sequence Type Exemplar sequence
Representative Public ID F01D4.5 NCBI
Target Description F01D4.5 /REP_DB=WormBase Gene ID /WP=CE23625 /TR=O17753 /GB=CAB02880.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069536(11), NM_069535(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069536 NCBI Caenorhabditis elegans F01D4.5a (F01D4.5) mRNA, complete cds. 11/11 A 
NM_069535 NCBI Caenorhabditis elegans F01D4.5b (F01D4.5) mRNA, complete cds. 9/11 A 
SNAP00000032308 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10483068:10483620:-1 10/11 None
F01D4.5a ENSEMBL cdna:known chromosome:CEL140:IV:10482658:10483620:-1 gene:F01D4.5 11/11 A 
F01D4.5b ENSEMBL cdna:known chromosome:CEL140:IV:10482667:10483640:-1 gene:F01D4.5 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000032320 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10482770-10483626(-) 100.0 100.0
Public Domain and Genome References
Ensembl F01D4.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02880 Hypothetical protein F01D4.5a [Caenorhabditis elegans] ref|NP_501937.1| F01D4.5a [Caenorhabditis elegans] 1.0E-108
blast CAC70083 Hypothetical protein F01D4.5b [Caenorhabditis elegans] ref|NP_501936.1| F01D4.5b [Caenorhabditis elegans] 1.0E-105
blast CAB02880 Hypothetical protein F01D4.5a [Caenorhabditis elegans] ref|NP_501937.1| F01D4.5a [Caenorhabditis elegans] 3.0E-97
blast CAC70083 Hypothetical protein F01D4.5b [Caenorhabditis elegans] ref|NP_501936.1| F01D4.5b [Caenorhabditis elegans] 5.0E-97
blast CAE63797 Hypothetical protein CBG08339 [Caenorhabditis briggsae] 8.0E-82
Sequence
Target Sequence 
>C. ELEGANS:179664_S_AT
aattcagtgcataaatcaccacccaaaaaacggagacgtgtgaagaagaagaaaagaaat
gaggaagatgaagagtacgaagagaacaaaaatatggccactcaaataaatcaaaaattt
ggttcaaagtataaatcaaatagaaaagatgagactccgatgtttgaagtgagaaatgga
aaatcagttatcaaaaattcggggaatcacgaagcaactgtcaatcgaactttggatttt
cacatgacaaagctttttcagtgggaagagcagtcagacgccattgaatcttcctatact
gccaaaaaacctacaaaaatcgaattatggttccatggctcatgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCAGTGCATAAATCACCACCCA 530 175 43 Antisense
TCACCACCCAAAAAACGGAGACGTG 88 625 58 Antisense
AAATATGGCCACTCAAATAAATCAA 374 115 132 Antisense
GATGAGACTCCGATGTTTGAAGTGA 281 411 190 Antisense
GGGGAATCACGAAGCAACTGTCAAT 120 499 243 Antisense
GAAGCAACTGTCAATCGAACTTTGG 228 341 253 Antisense
CGAACTTTGGATTTTCACATGACAA 266 253 268 Antisense
CACATGACAAAGCTTTTTCAGTGGG 706 195 283 Antisense
GTGGGAAGAGCAGTCAGACGCCATT 216 487 303 Antisense
AGTCAGACGCCATTGAATCTTCCTA 319 61 314 Antisense
GAATTATGGTTCCATGGCTCATGTG 261 325 364 Antisense
Sequence Source Affymetrix Proprietary Database