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[179663_at]

Description F09C3.5 /REP_DB=WormBase Gene ID /WP=CE24886 /TR=Q9NAQ7 /GB=CAB82208.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 60      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 50.9
(1.3)
P 		52.2
(1.4)
P 		67.6
(3)
M 		9.1
(-3)
A 		59
B 40.6
(3)
P 		32.7
(-1.1)
A 		29
(-3)
A 		33
(-0.9)
A 		12
C 30.2
(-3)
A 		37.2
(-1.5)
A 		34.9
(-2)
A 		57.4
(3)
A 		27
avr 40.6
(1.2) 		40.7
(1.2) 		43.8
(3) 		33.2
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 63
(3)
A 		49.4
(1.6)
A 		23.9
(-1.1)
A 		16.2
(-1.9)
A 		5.8
(-3)
A 		29.7
(-0.5)
A 		57
B 45.8
(2.3)
P 		35.4
(-0)
P 		49.1
(3)
P 		43.2
(1.7)
P 		24
(-2.5)
A 		21.8
(-3)
A 		27
C 26
(-0.4)
A 		48.5
(2.3)
P 		54.3
(3)
P 		37.9
(1)
A 		4.8
(-3)
A 		45
(1.9)
P 		50
avr 44.9
(3) 		44.4
(2.9) 		42.4
(2.6) 		32.4
(0.8) 		11.5
(-3) 		32.2
(0.7) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 18.5
(3)
P 		11.3
(0.5)
P 		17.7
(2.7)
M 		1.3
(-3)
A 		17
B 13
(3)
P 		8.1
(-1.7)
A 		6.7
(-3)
A 		7
(-2.7)
A 		6
C 10
(-2.3)
A 		10.7
(-0.6)
A 		12.2
(3)
A 		9.7
(-3)
A 		3
avr 13.8
(3) 		10
(0.1) 		12.2
(1.8) 		6
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 11.6
(0.7)
A 		17.6
(3)
A 		5.2
(-1.7)
A 		4.1
(-2.1)
A 		1.8
(-3)
A 		7.2
(-0.9)
A 		16
B 15.9
(3)
P 		11.8
(-0.2)
P 		11.9
(-0.1)
P 		11.4
(-0.5)
P 		9.7
(-1.8)
A 		8.1
(-3)
A 		8
C 9.7
(0.6)
A 		14.8
(2.9)
P 		13.8
(2.4)
P 		7.6
(-0.3)
A 		1.6
(-3)
A 		15.1
(3)
P 		14
avr 12.4
(1.7) 		14.7
(3) 		10.3
(0.4) 		7.7
(-1.1) 		4.4
(-3) 		10.1
(0.3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179663_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1739
Sequence Type Exemplar sequence
Representative Public ID F09C3.5 NCBI
Target Description F09C3.5 /REP_DB=WormBase Gene ID /WP=CE24886 /TR=Q9NAQ7 /GB=CAB82208.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061093(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061093 NCBI Caenorhabditis elegans F09C3.5 (F09C3.5) mRNA, complete cds. 11/11 None
F09C3.5 ENSEMBL cdna:known chromosome:CEL140:I:14291624:14293437:-1 gene:F09C3.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039656 8/11 Cross Hyb Matching Probes None
GENEFINDER00000039672 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14291554-14293368(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F09C3.5
Entrez Gene 184229 Entrez gene
SwissProt Q9NAQ7 EMBL-EBI
WormBase CE24886 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB82208 Hypothetical protein F09C3.5 [Caenorhabditis elegans] ref|NP_493494.1| F09C3.5 [Caenorhabditis elegans] 0.0
blast CAB07181 Hypothetical protein F09C3.3 [Caenorhabditis elegans] ref|NP_493495.1| F09C3.3 [Caenorhabditis elegans] 2.0E-91
blast CAB04424 Hypothetical protein F49B2.2 [Caenorhabditis elegans] ref|NP_493498.1| F49B2.2 [Caenorhabditis elegans] 4.0E-39
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 7.6E-5
Sequence
Target Sequence 
>C. ELEGANS:179663_AT
gccgaagatcacacttcacgaactgattgagcattttctagttttagtccataggcccag
aatccaatatctgagttttaaaaactgtatgttggatttaaattcaatcagtgagatatt
caaaggattccctataggaatattgaacatttctgctgaaagatacgattccaatgagaa
tacgttctacagtcagattttacacaattttgcggaccaaacggaacaatttgctatcga
atacggtggaatatttcacaacagacagcagattcacgagctattggccagagatcttca
ttgtgtagtgttcacaaaaatggcgccttcttccttgcaaatagtaaacgctacacgtat
tgtactagattttcaagttgaaccccaatttctgaacgaattcataaaactctggcagcg
aggttccaaccccaggatgaaatattttcaggctagagttgatgttaaaaatgaacaatg
cggatcacaaatactcaatggagttgagacattttccttcgagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCGAAGATCACACTTCACGAACTG 571 285 366 Antisense
GAGCATTTTCTAGTTTTAGTCCATA 75 389 394 Antisense
GTCCATAGGCCCAGAATCCAATATC 42 475 412 Antisense
GATTTTACACAATTTTGCGGACCAA 526 429 561 Antisense
GATTCACGAGCTATTGGCCAGAGAT 635 429 636 Antisense
GGCCAGAGATCTTCATTGTGTAGTG 327 543 651 Antisense
TCACAAAAATGGCGCCTTCTTCCTT 536 625 677 Antisense
CGCCTTCTTCCTTGCAAATAGTAAA 681 257 689 Antisense
GTTGAACCCCAATTTCTGAACGAAT 662 351 742 Antisense
AAACTCTGGCAGCGAGGTTCCAACC 468 111 772 Antisense
GAGTTGAGACATTTTCCTTCGAGGA 581 397 866 Antisense
Sequence Source Affymetrix Proprietary Database