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[179662_at] 7TM receptor, sre family

Description C38C6.4 /REP_DB=WormBase Gene ID /WP=CE15696 /TR=O45300 /GB=CAB07564.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 11      6grp_cgc > 10      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 9.5
(-3)
A 		23
(-2.3)
A 		15.3
(-2.7)
A 		127.2
(3)
P 		118
B 53.4
(3)
A 		43.1
(1.7)
A 		6.6
(-3)
A 		20.4
(-1.2)
A 		47
C 19.8
(-2.7)
A 		17.4
(-3)
A 		36.8
(-0.6)
A 		66.7
(3)
A 		49
avr 27.6
(-2.1) 		27.8
(-2.1) 		19.6
(-3) 		71.4
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 102
(3)
P 		34.3
(-1.2)
A 		54.7
(0.1)
A 		7.1
(-2.9)
A 		36.1
(-1.1)
A 		5.2
(-3)
A 		97
B 39.3
(2.1)
A 		45.5
(3)
A 		27.4
(0.3)
A 		42.2
(2.5)
A 		22.8
(-0.4)
A 		5.1
(-3)
A 		40
C 52.3
(3)
A 		10.9
(-2.2)
A 		22.8
(-0.7)
A 		45.5
(2.1)
A 		5.5
(-2.9)
A 		4.5
(-3)
A 		48
avr 64.5
(3) 		30.2
(-0.5) 		35
(0) 		31.6
(-0.3) 		21.5
(-1.3) 		4.9
(-3) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 3.4
(-3)
A 		5
(-2.4)
A 		4
(-2.8)
A 		18.6
(3)
P 		15
B 17
(3)
A 		10.7
(0.6)
A 		1.5
(-3)
A 		4.3
(-1.9)
A 		16
C 6.6
(-1.8)
A 		5
(-3)
A 		12.8
(3)
A 		11.3
(1.8)
A 		8
avr 9
(0.3) 		6.9
(-2.1) 		6.1
(-3) 		11.4
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 18.8
(3)
P 		12.2
(0.7)
A 		11.9
(0.6)
A 		1.8
(-2.8)
A 		10.9
(0.3)
A 		1.3
(-3)
A 		18
B 13.7
(2.4)
A 		15.1
(3)
A 		6.7
(-0.8)
A 		11.2
(1.2)
A 		9.3
(0.4)
A 		1.9
(-3)
A 		13
C 19.4
(3)
A 		3.3
(-2.4)
A 		5.8
(-1.6)
A 		9.2
(-0.4)
A 		1.8
(-2.9)
A 		1.5
(-3)
A 		18
avr 17.3
(3) 		10.2
(0.3) 		8.1
(-0.5) 		7.4
(-0.8) 		7.3
(-0.8) 		1.6
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179662_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3310
Sequence Type Exemplar sequence
Representative Public ID C38C6.4 NCBI
Target Description C38C6.4 /REP_DB=WormBase Gene ID /WP=CE15696 /TR=O45300 /GB=CAB07564.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064641(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064641 NCBI Caenorhabditis elegans Serpentine Receptor, class E (epsilon) family member (sre-13) (sre-13) mRNA, complete cds. 10/11 None
SNAP00000016881 ENSEMBL cdna:SNAP chromosome:CEL140:II:14634547:14635592:-1 10/11 None
GENEFINDER00000016887 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14634547:14636689:-1 11/11 None
C38C6.4 ENSEMBL cdna:known chromosome:CEL140:II:14634547:14636728:-1 gene:C38C6.4 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14634543-14636725(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, sre family
Gene Symbol sre-13
Ensembl C38C6.4
Entrez Gene 183306 Entrez gene
SwissProt O45300 EMBL-EBI
WormBase CE38042 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07564 Hypothetical protein C38C6.4 [Caenorhabditis elegans] ref|NP_497042.2| Serpentine Receptor, class E (epsilon) family member (sre-13) [Caenorhabditis elegans] sp|O45300|SRE13_CAEEL Serpentine receptor class epsilon-13 (Protein sre-13) 0.0
blast CAE65903 Hypothetical protein CBG11070 [Caenorhabditis briggsae] 1.0E-127
blast CAE65903 Hypothetical protein CBG11070 [Caenorhabditis briggsae] 1.0E-124
blast CAB07564 Hypothetical protein C38C6.4 [Caenorhabditis elegans] ref|NP_497042.2| Serpentine Receptor, class E (epsilon) family member (sre-13) [Caenorhabditis elegans] sp|O45300|SRE13_CAEEL Serpentine receptor class epsilon-13 (Protein sre-13) 1.0E-114
blast CAE65903 Hypothetical protein CBG11070 [Caenorhabditis briggsae] 5.0E-89
blast NP_502328 Serpentine Receptor, class E (epsilon) family member (sre-14) [Caenorhabditis elegans] gb|AAB97543.2| Hypothetical protein C42C1.1 [Caenorhabditis elegans] 1.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 6.1E-16
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 2.2E-9
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 9.9E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497042.2 7 31-53,74-93,108-130,150-168,178-200,232-254,269-288
C38C6.4 7 31-53,74-93,108-130,150-168,178-200,232-254,269-288
SNAP00000016881 3 5-27,48-66,76-98
GENEFINDER00000016887 7 20-42,61-80,95-117,137-159,190-212,244-266,281-300
Sequence
Target Sequence 
>C. ELEGANS:179662_AT
ggtggtttgccacatatttcctgaatgattacgagaaaaaccaaagaacttggctagttg
gtctgattttgtggattatttactctatcgcttttatttctgcactcgactttcacactg
gtgagttgaagagagcggtgagagatagaaaggtactgccatgtgtacacgctcgtgacc
cgtttctctcgtccgctcctagcaccgttattcatgttactatttttattttgctgagtt
gtctggcgtatttgagcaactatctcaattttctgctgaatagaagttattactacaaga
gcaaccgttctgatggaggaggttattcattggcacagagatttcaaatttctgataaca
ttagattctcatatgcaattgtcactccatttgtcatctatcatcacaatccaaagtaca
gaaccgagcttcagaagattgccaactcaattcgtaatattcgagtgagaacaaacaaaa
atcaaataatgccaatggattctctggatgagagcttcaactcgttgaggatccaggaca
cat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGGTTTGCCACATATTTCCTGAA 208 499 410 Antisense
GTGGATTATTTACTCTATCGCTTTT 48 491 480 Antisense
ATCGCTTTTATTTCTGCACTCGACT 568 35 496 Antisense
TGCACTCGACTTTCACACTGGTGAG 535 577 510 Antisense
TGCCATGTGTACACGCTCGTGACCC 641 585 566 Antisense
CTCCTAGCACCGTTATTCATGTTAC 427 235 605 Antisense
TGCTGAGTTGTCTGGCGTATTTGAG 481 581 641 Antisense
GGAGGAGGTTATTCATTGGCACAGA 588 515 724 Antisense
GATTCTCATATGCAATTGTCACTCC 75 433 773 Antisense
GTCACTCCATTTGTCATCTATCATC 622 465 790 Antisense
AACTCGTTGAGGATCCAGGACACAT 315 141 928 Antisense
Sequence Source Affymetrix Proprietary Database