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[179661_at] G-protein coupled receptor, srv family

Description F53F1.9 /REP_DB=WormBase Gene ID /WP=CE10948 /TR=Q9XVM5 /GB=CAB03126.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 0      6grp_cgc > 90      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 34.2
(3)
A 		3.7
(-3)
A 		18.2
(-0.1)
A 		20.9
(0.4)
A 		31
B 4.2
(-3)
A 		4.6
(-2.8)
A 		17.2
(1.9)
A 		20
(3)
A 		16
C 5.7
(-3)
A 		20
(-1.3)
A 		18.8
(-1.5)
A 		56.7
(3)
A 		51
avr 14.7
(-1.6) 		9.4
(-3) 		18.1
(-0.7) 		32.5
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 34.6
(3)
A 		3.4
(-3)
A 		23.8
(0.9)
A 		15.5
(-0.7)
A 		26
(1.3)
A 		10.6
(-1.6)
A 		31
B 8.4
(-1.5)
A 		22.6
(1.8)
A 		27.8
(3)
A 		7.9
(-1.7)
A 		25.9
(2.6)
A 		2.2
(-3)
A 		26
C 3.7
(-3)
A 		26.2
(3)
A 		22.3
(2)
A 		23
(2.1)
A 		24.9
(2.7)
A 		5.2
(-2.6)
A 		23
avr 15.6
(-0.1) 		17.4
(0.5) 		24.6
(2.7) 		15.5
(-0.1) 		25.6
(3) 		6
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 12.4
(3)
A 		0.8
(-3)
A 		4.8
(-0.9)
A 		3.1
(-1.8)
A 		12
B 1.3
(-2.6)
A 		1.1
(-3)
A 		4
(2.4)
A 		4.3
(3)
A 		3
C 1.9
(-3)
A 		5.7
(-0)
A 		6.6
(0.7)
A 		9.6
(3)
A 		8
avr 5.2
(2.1) 		2.5
(-3) 		5.1
(1.9) 		5.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 6.4
(1.7)
A 		1.2
(-3)
A 		5.2
(0.6)
A 		3.9
(-0.5)
A 		7.8
(3)
A 		2.6
(-1.7)
A 		7
B 2.9
(-1.7)
A 		7.5
(1.1)
A 		6.7
(0.6)
A 		2.1
(-2.2)
A 		10.5
(3)
A 		0.8
(-3)
A 		10
C 1.4
(-3)
A 		8
(2.9)
A 		5.7
(0.9)
A 		4.6
(-0.1)
A 		8.1
(3)
A 		1.7
(-2.7)
A 		7
avr 3.6
(-1.4) 		5.6
(0.3) 		5.9
(0.5) 		3.5
(-1.5) 		8.8
(3) 		1.7
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179661_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13032
Sequence Type Exemplar sequence
Representative Public ID F53F1.9 NCBI
Target Description F53F1.9 /REP_DB=WormBase Gene ID /WP=CE10948 /TR=Q9XVM5 /GB=CAB03126.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073928(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073928 NCBI Caenorhabditis elegans Serpentine Receptor, class V family member (srv-10) (srv-10) mRNA, complete cds. 11/11 None
SNAP00000038185 ENSEMBL cdna:SNAP chromosome:CEL140:V:13426747:13427857:1 11/11 None
GENEFINDER00000038188 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13426499:13427857:1 11/11 None
F53F1.9 ENSEMBL cdna:known chromosome:CEL140:V:13426499:13427857:1 gene:F53F1.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13426498-13427857(+) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor, srv family
Gene Symbol srv-10
Ensembl F53F1.9
Entrez Gene 186173 Entrez gene
SwissProt Q9XVM5 EMBL-EBI
WormBase CE10948 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03126 Hypothetical protein F53F1.9 [Caenorhabditis elegans] ref|NP_506329.1| Serpentine Receptor, class V family member (srv-10) [Caenorhabditis elegans] 1.0E-167
blast CAB03130 Hypothetical protein F53F1.8 [Caenorhabditis elegans] ref|NP_506328.2| Serpentine Receptor, class V family member (srv-9) [Caenorhabditis elegans] 1.0E-120
blast CAB03126 Hypothetical protein F53F1.9 [Caenorhabditis elegans] ref|NP_506329.1| Serpentine Receptor, class V family member (srv-10) [Caenorhabditis elegans] 1.0E-117
blast CAE62598 Hypothetical protein CBG06713 [Caenorhabditis briggsae] 1.0E-113
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506329.1 7 10-32,52-74,89-111,132-154,184-206,244-263,273-295
F53F1.9 7 10-32,52-74,89-111,132-154,184-206,244-263,273-295
SNAP00000038185 5 27-49,54-76,106-128,166-185,195-217
GENEFINDER00000038188 7 10-32,52-74,89-111,132-154,184-206,244-263,273-295
Sequence
Target Sequence 
>C. ELEGANS:179661_AT
gggagagccatgttatttgttcataatgcaagcaattcaattgggtggaggagttcttgc
atgggtgttactgggaccagatctctatgagtatattttggaggatgacggattattcgc
agtaggatctgaagtatcggaatcactttggttttttgattttgcagcggtaatggaagt
tgttttagttattgcaataattgtgaacaatgtgataacatatgtaatgtttcgaatgaa
attcaaaaagaaagttgtgttcaataaaaacgctataactccaagacaaatgcaatcaag
ccaagaaaaacaaaaacgagaaagtggacttgataagatgactttcatagtttgcttcct
cgaacttgtctattttgcatttgtagtctattctcttcaaattaatcaaacgatgaacaa
acgaacattttacttttactataatatcctttgcgtcatctactctacagtttctgcatg
gacgcttctgattttttcaaagcctatcaatttgcaagttcgtgagaagttctcaaagct
gagttcaaaaaaggtgactcgttcaatttctatatcagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGAGAGCCATGTTATTTGTTCATA 575 495 399 Antisense
GTTCTTGCATGGGTGTTACTGGGAC 150 443 451 Antisense
ACTGGGACCAGATCTCTATGAGTAT 523 97 468 Antisense
GTATCGGAATCACTTTGGTTTTTTG 177 455 532 Antisense
TGACTTTCATAGTTTGCTTCCTCGA 79 571 737 Antisense
GCTTCCTCGAACTTGTCTATTTTGC 499 305 752 Antisense
TGCATTTGTAGTCTATTCTCTTCAA 316 579 774 Antisense
TAATATCCTTTGCGTCATCTACTCT 128 635 840 Antisense
GTCATCTACTCTACAGTTTCTGCAT 154 467 853 Antisense
AGTTTCTGCATGGACGCTTCTGATT 553 63 867 Antisense
GACTCGTTCAATTTCTATATCAGCT 137 375 954 Antisense
Sequence Source Affymetrix Proprietary Database