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[179660_at]

Description C36F7.2 /REP_DB=WormBase Gene ID /WP=CE24828 /TR=Q93349 /GB=CAB02814.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 0      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 61.1
(-2.6)
A 		58
(-3)
A 		73.4
(-1)
A 		103.7
(3)
A 		46
B 54.5
(0.3)
A 		29.1
(-3)
A 		46.4
(-0.7)
A 		74.9
(3)
A 		46
C 24.4
(-3)
A 		24.7
(-3)
A 		72.8
(3)
A 		54.7
(0.8)
A 		48
avr 46.7
(-1.6) 		37.3
(-3) 		64.2
(1) 		77.8
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 384
1 2 3 4 5 6 range
A 64.9
(-2.4)
A 		49.5
(-2.7)
A 		37.7
(-3)
A 		82.5
(-2)
A 		296.6
(2.9)
P 		301
(3)
P 		263
B 57.9
(-2.4)
A 		26.9
(-3)
A 		47.4
(-2.6)
A 		150.2
(-0.6)
A 		331.9
(3)
P 		321.6
(2.8)
P 		305
C 58.6
(-2.2)
A 		10
(-3)
A 		49.6
(-2.4)
A 		160.1
(-0.7)
A 		199.2
(-0)
A 		394.1
(3)
P 		384
avr 60.5
(-2.4) 		28.8
(-3) 		44.9
(-2.7) 		130.9
(-1) 		275.9
(1.8) 		338.9
(3) 		310
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 22.2
(3)
A 		12.6
(-3)
A 		19.2
(1.1)
A 		15.2
(-1.4)
A 		10
B 17.4
(3)
A 		7.2
(-3)
A 		10.8
(-0.9)
A 		16
(2.2)
A 		10
C 8.1
(-2.7)
A 		7.1
(-3)
A 		25.4
(3)
A 		9.2
(-2.3)
A 		18
avr 15.9
(1.4) 		9
(-3) 		18.5
(3) 		13.5
(-0.2) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 12
(-2.7)
A 		17.6
(-2.3)
A 		8.2
(-3)
A 		20.9
(-2.1)
A 		89.5
(3)
P 		73.3
(1.8)
P 		81
B 20.1
(-2.5)
A 		9
(-3)
A 		11.5
(-2.9)
A 		39.8
(-1.5)
A 		134.9
(3)
P 		119.9
(2.3)
P 		126
C 21.7
(-2.1)
A 		3
(-3)
A 		12.6
(-2.6)
A 		32.2
(-1.6)
A 		64.5
(-0.1)
A 		131.9
(3)
P 		129
avr 17.9
(-2.5) 		9.9
(-3) 		10.8
(-2.9) 		31
(-1.7) 		96.3
(2.3) 		108.4
(3) 		99
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179660_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1226
Sequence Type Exemplar sequence
Representative Public ID C36F7.2 NCBI
Target Description C36F7.2 /REP_DB=WormBase Gene ID /WP=CE24828 /TR=Q93349 /GB=CAB02814.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060133(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060133 NCBI Caenorhabditis elegans C36F7.2 (C36F7.2) mRNA, complete cds. 11/11 None
GENEFINDER00000041487 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9558378:9570584:1 11/11 None
C36F7.2 ENSEMBL cdna:known chromosome:CEL140:I:9552871:9566155:1 gene:C36F7.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041479 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9556293-9566086(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C36F7.2
Entrez Gene 172790 Entrez gene
SwissProt Q93349 EMBL-EBI
WormBase CE24828 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02814 Hypothetical protein C36F7.2 [Caenorhabditis elegans] ref|NP_492534.1| C36F7.2 [Caenorhabditis elegans] 1.0E-146
blast CAE63690 Hypothetical protein CBG08199 [Caenorhabditis briggsae] 1.0E-88
blast CAB02814 Hypothetical protein C36F7.2 [Caenorhabditis elegans] ref|NP_492534.1| C36F7.2 [Caenorhabditis elegans] 5.0E-85
blast CAE63690 Hypothetical protein CBG08199 [Caenorhabditis briggsae] 1.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 6.3E-6
Pfam IPR002110 EMBL-EBI Ankyrin 6.1E-6
Pfam IPR002110 EMBL-EBI Ankyrin 6.3E-6
Pfam IPR002110 EMBL-EBI Ankyrin 6.1E-6
Sequence
Target Sequence 
>C. ELEGANS:179660_AT
ggctgccgttggattcgatcagttcgtcatggtgatgtgtcaacggtgaaaaaaatgttg
gaggaaaattccgagttggtaaactatgctccgacgtatggtcctttggcgcttcatttg
gcagcagctcgttctgatcgatcaatcatattgcttctattggcaaaaggtgcggaagtt
gattcaagggatgcggcaggctacacgtgtcttcaattggcaattcgacgaggcaaccaa
tcgttggcccattttctgatcttgcaaggagccaacatcgaactcatcgaccctgatggc
cgtggtattatcgattatgatggttggagtggagaagatcaacgatctgccgaaaagcat
ttttatggtaaaataattcttcgcccaaaagctcattcatttgtcggatctccatcatca
atctctatgaaaagctcgaaatctactcgtacaatgagaccatcttctacaccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTGCCGTTGGATTCGATCAGTTC 28 539 316 Antisense
AACTATGCTCCGACGTATGGTCCTT 552 139 397 Antisense
TCCTTTGGCGCTTCATTTGGCAGCA 77 593 417 Antisense
AGCAGCTCGTTCTGATCGATCAATC 529 77 438 Antisense
CAGGCTACACGTGTCTTCAATTGGC 37 209 512 Antisense
ACGAGGCAACCAATCGTTGGCCCAT 306 93 543 Antisense
TTGGCCCATTTTCTGATCTTGCAAG 375 707 559 Antisense
TCGACCCTGATGGCCGTGGTATTAT 532 599 602 Antisense
AATTCTTCGCCCAAAAGCTCATTCA 318 177 690 Antisense
CTCATTCATTTGTCGGATCTCCATC 568 229 707 Antisense
ACAATGAGACCATCTTCTACACCAA 633 113 766 Antisense
Sequence Source Affymetrix Proprietary Database