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[179659_at]

Description R06B9.3 /REP_DB=WormBase Gene ID /WP=CE16301 /TR=O17982 /GB=CAB05787.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 99      6grp_total > 95      4grp_total > 48      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 251
1 2 3 4 range
A 196.7
(1.3)
A 		237.6
(3)
P 		238.6
(3)
P 		91.6
(-3)
A 		147
B 171.7
(-3)
A 		183.4
(-2.6)
P 		342.5
(3)
P 		238.7
(-0.6)
A 		171
C 127.3
(-3)
P 		243.5
(2.8)
P 		246.6
(3)
P 		208
(1.1)
A 		119
avr 165.2
(-3) 		221.5
(0.1) 		275.9
(3) 		179.4
(-2.2) 		111

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 219
1 2 3 4 5 6 range
A 223.7
(-1.1)
A 		173.4
(-3)
P 		172.6
(-3)
P 		240.5
(-0.5)
P 		337.9
(3)
P 		308.4
(1.9)
P 		165
B 172.3
(-3)
A 		226.3
(0.3)
P 		215.3
(-0.4)
P 		241
(1.2)
M 		270.7
(3)
P 		263.3
(2.5)
P 		98
C 129
(-3)
P 		198.4
(-1.1)
P 		185.7
(-1.4)
P 		236.7
(-0)
A 		347.6
(3)
P 		295.2
(1.6)
P 		219
avr 175
(-3) 		199.4
(-2) 		191.2
(-2.3) 		239.4
(-0.3) 		318.7
(3) 		289
(1.8) 		144
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 71.6
(3)
A 		51.6
(0.9)
P 		62.4
(2.1)
P 		13.4
(-3)
A 		58
B 54.7
(-1.3)
A 		45.3
(-3)
P 		79.4
(3)
P 		50.9
(-2)
A 		34
C 42.1
(-2.2)
P 		70
(1.1)
P 		85.9
(3)
P 		35.1
(-3)
A 		51
avr 56.1
(0.2) 		55.6
(0.2) 		75.9
(3) 		33.1
(-3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 41.2
(-2.7)
A 		61.7
(-0.8)
P 		37.6
(-3)
P 		61
(-0.8)
P 		102
(3)
P 		75.1
(0.5)
P 		64
B 59.9
(-2.2)
A 		75.3
(-0.6)
P 		52.3
(-3)
P 		63.8
(-1.8)
M 		110
(3)
P 		98.2
(1.8)
P 		58
C 47.8
(-3)
P 		60.5
(-1.8)
P 		47.3
(-3)
P 		47.6
(-3)
A 		112.5
(3)
P 		98.8
(1.7)
P 		65
avr 49.6
(-2.6) 		65.8
(-1.1) 		45.7
(-3) 		57.5
(-1.9) 		108.2
(3) 		90.7
(1.3) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179659_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3767
Sequence Type Exemplar sequence
Representative Public ID R06B9.3 NCBI
Target Description R06B9.3 /REP_DB=WormBase Gene ID /WP=CE16301 /TR=O17982 /GB=CAB05787.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064481(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064481 NCBI Caenorhabditis elegans R06B9.3 (R06B9.3) mRNA, complete cds. 11/11 None
SNAP00000002411 ENSEMBL cdna:SNAP chromosome:CEL140:II:13752217:13768300:1 11/11 None
GENEFINDER00000002413 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13758163:13760990:1 11/11 None
R06B9.3.2 ENSEMBL cdna:known chromosome:CEL140:II:13758309:13760990:1 gene:R06B9.3 11/11 None
R06B9.3.1 ENSEMBL cdna:known chromosome:CEL140:II:13758311:13761117:1 gene:R06B9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13758314-13760987(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R06B9.3
Entrez Gene 175022 Entrez gene
SwissProt O17982 EMBL-EBI
WormBase CE16301 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
7600 sensory perception inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05787 Hypothetical protein R06B9.3 [Caenorhabditis elegans] ref|NP_496882.1| R06B9.3 [Caenorhabditis elegans] 0.0
blast AAF99937 Hypothetical protein F35F10.12 [Caenorhabditis elegans] ref|NP_503917.1| F35F10.12 [Caenorhabditis elegans] 0.0
blast CAB05786 Hypothetical protein R06B9.1 [Caenorhabditis elegans] ref|NP_496883.2| R06B9.1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000698 EMBL-EBI Arrestin 2.1E-34
Pfam IPR000698 EMBL-EBI Arrestin 6.2E-52
Pfam IPR000698 EMBL-EBI Arrestin 7.3E-50
Pfam IPR000698 EMBL-EBI Arrestin 2.4E-45
Pfam IPR000698 EMBL-EBI Arrestin 7.2E-29
Pfam IPR000698 EMBL-EBI Arrestin 1.1E-29
Pfam IPR000698 EMBL-EBI Arrestin 6.7E-51
Pfam IPR000698 EMBL-EBI Arrestin 6.2E-52
Pfam IPR000698 EMBL-EBI Arrestin 1.1E-58
Pfam IPR000698 EMBL-EBI Arrestin 6.2E-52
Pfam IPR000698 EMBL-EBI Arrestin 1.1E-58
Sequence
Target Sequence 
>C. ELEGANS:179659_AT
acgaagaccgtcgtcaagcatggccaggaaatgacagtggctcccaggaatgagcacaaa
tttgcgatggagctccgtcttccgtctgtaactccaaccatcaatcagttctcaccggtg
attactgtagagtacattgtgcaattccacgtggagaccagctcaacattcgggagtgat
gttgattgtgaaatggggatcctgattggaacagtgcctattcggcagttccttccacca
gcctactatccacaggatccgaatcttccacagatcctgccaactccgattggaggaggg
gttgttgctccaccaccagggtatggattcttgccgatggcagatggctcggagaaggga
gctggtgatgcatcatatccagctgccagcatgccaatgtatcctattccgaatgtccca
tatcctagcaaagatgatggtactgtagtgattccaagtgctccaccactatcctacgaa
gaatcaatgtttggacaagatggaaccgagctcaacactgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGAAGACCGTCGTCAAGCATGGCC 615 91 790 Antisense
ATCAGTTCTCACCGGTGATTACTGT 289 29 893 Antisense
GGAGACCAGCTCAACATTCGGGAGT 500 519 942 Antisense
ACAGTGCCTATTCGGCAGTTCCTTC 555 105 1000 Antisense
TCCACAGGATCCGAATCTTCCACAG 604 587 1038 Antisense
CAGGGTATGGATTCTTGCCGATGGC 24 209 1106 Antisense
GGTGATGCATCATATCCAGCTGCCA 493 499 1153 Antisense
TCCAGCTGCCAGCATGCCAATGTAT 146 587 1167 Antisense
GCCAATGTATCCTATTCCGAATGTC 38 279 1182 Antisense
TTCCGAATGTCCCATATCCTAGCAA 292 699 1196 Antisense
AGATGGAACCGAGCTCAACACTGAT 565 67 1287 Antisense
Sequence Source Affymetrix Proprietary Database