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[179658_at]

Description W07G1.3 /REP_DB=WormBase Gene ID /WP=CE24037 /TR=Q9XUK2 /GB=CAB04935.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 41      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 42      6grp_total > 31      4grp_total > 59      6grp_cgc > 83      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 800
1 2 3 4 range
A 799.2
(0.7)
P 		1010.7
(2.8)
P 		1034.5
(3)
P 		424.4
(-3)
P 		610
B 800.5
(0.5)
P 		1077.9
(2.6)
P 		1130.5
(3)
P 		348.8
(-3)
P 		782
C 787.9
(0.6)
P 		1098.1
(3)
P 		961.5
(1.9)
P 		330.5
(-3)
P 		768
avr 795.9
(0.7) 		1062.2
(3) 		1042.2
(2.8) 		367.9
(-3) 		694

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1028
1 2 3 4 5 6 range
A 743
(-0.4)
P 		1071.4
(1.6)
P 		1291
(3)
P 		891
(0.5)
P 		677.2
(-0.9)
P 		337.9
(-3)
P 		953
B 741.4
(-0.6)
P 		1130.9
(1.7)
P 		1352.9
(3)
P 		973.4
(0.8)
P 		697.8
(-0.8)
P 		331.8
(-3)
P 		1021
C 792.6
(-0.3)
P 		1095.3
(1.5)
P 		1359.7
(3)
P 		1070.1
(1.3)
P 		658.1
(-1.1)
P 		335.8
(-3)
P 		1024
avr 759
(-0.5) 		1099.2
(1.6) 		1334.5
(3) 		978.2
(0.9) 		677.7
(-0.9) 		335.2
(-3) 		999
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 279
1 2 3 4 range
A 291
(3)
P 		219.4
(1.1)
P 		270.4
(2.5)
P 		62.1
(-3)
P 		229
B 255.3
(2.7)
P 		266.2
(3)
P 		262
(2.9)
P 		74.3
(-3)
P 		192
C 260.8
(1.4)
P 		315.7
(2.6)
P 		335.1
(3)
P 		55.7
(-3)
P 		279
avr 269
(2.5) 		267.1
(2.4) 		289.2
(3) 		64
(-3) 		225

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 299
1 2 3 4 5 6 range
A 137
(-1.9)
P 		381
(3)
P 		281.2
(1)
P 		226
(-0.1)
P 		204.4
(-0.5)
P 		82.3
(-3)
P 		299
B 258
(0.2)
P 		376.4
(3)
P 		328.5
(1.9)
P 		257.8
(0.2)
P 		283.5
(0.8)
P 		123.7
(-3)
P 		253
C 293.8
(1.7)
P 		334.2
(2.7)
P 		346.1
(3)
P 		215.2
(-0.4)
P 		213
(-0.4)
P 		112.4
(-3)
P 		234
avr 229.6
(-0.1) 		363.9
(3) 		318.6
(1.9) 		233
(-0) 		233.6
(-0) 		106.1
(-3) 		258
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179658_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3764
Sequence Type Exemplar sequence
Representative Public ID W07G1.3 NCBI
Target Description W07G1.3 /REP_DB=WormBase Gene ID /WP=CE24037 /TR=Q9XUK2 /GB=CAB04935.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064518(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064518 NCBI Caenorhabditis elegans W07G1.3 (W07G1.3) mRNA, complete cds. 11/11 None
SNAP00000025661 ENSEMBL cdna:SNAP chromosome:CEL140:II:13951960:13955856:-1 11/11 None
GENEFINDER00000025681 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13951960:13958227:-1 11/11 None
W07G1.3 ENSEMBL cdna:known chromosome:CEL140:II:13951830:13957415:-1 gene:W07G1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13951956-13954763(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol zip-3
Ensembl W07G1.3
Entrez Gene 189280 Entrez gene
SwissProt Q9XUK2 EMBL-EBI
WormBase CE37052 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04935 Hypothetical protein W07G1.3 [Caenorhabditis elegans] ref|NP_496919.2| W07G1.3 [Caenorhabditis elegans] 1.0E-114
blast CAE73317 Hypothetical protein CBG20744 [Caenorhabditis briggsae] 2.0E-81
blast CAE73317 Hypothetical protein CBG20744 [Caenorhabditis briggsae] 3.0E-81
blast T26268 hypothetical protein W07G1.4 - Caenorhabditis elegans 3.0E-27
Sequence
Target Sequence 
>C. ELEGANS:179658_AT
caacaaccaccaacatttgacccatcaacactaatgccccagcaacaaatgatgttccat
ccaggtcaatatcatatggttatgagcccgattgctccgcacccgattccagttgatacg
aatggtgtgccacttggaactcaatgtccaatggctccaccaccatactcttcctttgct
ccacaatcctcatcatctggaatgcttcagcaacaaccacaggatctagtgattccccag
gacattccatttgacgtgaaacgggagattcaggagcatttagtgctccaaaacggcaag
aaacaaatgtcaatcgaagaaattgtcaagctcgtcgtcgtcgccctcaaagattcccaa
atcgaagaaggtcgtgaagaggaagagtctcccgaggaaattctccgacgaaagagaatt
cagaacaacctagcggctgcccggtaccgcaagcgacaacgcgaggctcgcgagagcgcc
gagagtgagctcggtgacctgacccgacggaacgatgagctccgcgatcaggtgtcccga
atgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACAACCACCAACATTTGACCCAT 702 189 355 Antisense
GATGTTCCATCCAGGTCAATATCAT 633 409 405 Antisense
TGGTTATGAGCCCGATTGCTCCGCA 578 549 431 Antisense
GAATGGTGTGCCACTTGGAACTCAA 325 333 474 Antisense
GAACTCAATGTCCAATGGCTCCACC 618 349 491 Antisense
AATCCTCATCATCTGGAATGCTTCA 38 169 539 Antisense
ACCACAGGATCTAGTGATTCCCCAG 406 85 570 Antisense
GATTCCCCAGGACATTCCATTTGAC 117 433 585 Antisense
GAGTCTCCCGAGGAAATTCTCCGAC 705 399 739 Antisense
CTGACCCGACGGAACGATGAGCTCC 189 239 853 Antisense
TCCGCGATCAGGTGTCCCGAATGGA 563 593 875 Antisense
Sequence Source Affymetrix Proprietary Database