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[179657_at]

Description F59A1.3 /REP_DB=WormBase Gene ID /WP=CE17937 /TR=O62279 /GB=CAB04535.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 29      6grp_cgc > 33      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 24.3
(3)
A 		13.6
(-0.5)
A 		6
(-3)
A 		14.6
(-0.2)
A 		18
B 4
(-3)
A 		14
(0.6)
A 		11.2
(-0.4)
A 		20.8
(3)
A 		17
C 18.8
(3)
A 		9.5
(-3)
A 		11.2
(-1.9)
A 		11.5
(-1.7)
A 		9
avr 15.7
(3) 		12.4
(-0.2) 		9.5
(-3) 		15.6
(2.9) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 44.4
(2.7)
A 		46
(3)
A 		10.4
(-2.8)
A 		8.9
(-3)
A 		14.4
(-2.1)
A 		12.9
(-2.4)
A 		37
B 10.2
(-1.4)
A 		5.7
(-2.4)
A 		30.7
(3)
A 		3.9
(-2.7)
A 		6.7
(-2.1)
A 		2.7
(-3)
A 		28
C 13.9
(3)
A 		11
(1.4)
A 		5.9
(-1.4)
A 		8
(-0.2)
A 		3.4
(-2.7)
A 		2.9
(-3)
A 		11
avr 22.8
(3) 		20.9
(2.3) 		15.7
(0.4) 		6.9
(-2.7) 		8.2
(-2.3) 		6.2
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 8.8
(3)
A 		3
(-1.8)
A 		1.6
(-3)
A 		2.1
(-2.6)
A 		7
B 1.3
(-3)
A 		3.5
(1.3)
A 		2.6
(-0.5)
A 		4.4
(3)
A 		3
C 6.2
(3)
A 		2.7
(-1.9)
A 		3.9
(-0.2)
A 		1.9
(-3)
A 		4
avr 5.4
(3) 		3.1
(-2.1) 		2.7
(-3) 		2.8
(-2.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 8.2
(-0.5)
A 		16.4
(3)
A 		2.3
(-3)
A 		2.3
(-3)
A 		4.3
(-2.1)
A 		3.1
(-2.7)
A 		14
B 3.5
(-0.7)
A 		1.9
(-2.2)
A 		7.5
(3)
A 		1
(-3)
A 		2.7
(-1.4)
A 		1
(-3)
A 		7
C 5.1
(3)
A 		3.4
(0.5)
A 		1.5
(-2.3)
A 		1.6
(-2.1)
A 		1.1
(-2.9)
A 		1
(-3)
A 		4
avr 5.6
(1.3) 		7.2
(3) 		3.8
(-0.6) 		1.6
(-3) 		2.7
(-1.8) 		1.7
(-2.9) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179657_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12530
Sequence Type Exemplar sequence
Representative Public ID F59A1.3 NCBI
Target Description F59A1.3 /REP_DB=WormBase Gene ID /WP=CE17937 /TR=O62279 /GB=CAB04535.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075072(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075072 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-92) (str-92) mRNA, complete cds. 11/11 None
SNAP00000002320 ENSEMBL cdna:SNAP chromosome:CEL140:V:17677522:17678419:-1 11/11 None
GENEFINDER00000002326 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17674276:17679229:-1 11/11 None
F59A1.3 ENSEMBL cdna:known chromosome:CEL140:V:17677522:17679229:-1 gene:F59A1.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028827 1/11 Cross Hyb Matching Probes None
SNAP00000002319 1/11 Cross Hyb Matching Probes None
F59A1.14 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17677521-17679229(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-92
Ensembl F59A1.3
Entrez Gene 186557 Entrez gene
SwissProt O62279 EMBL-EBI
WormBase CE17937 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04535 Hypothetical protein F59A1.3 [Caenorhabditis elegans] ref|NP_507473.1| Seven TM Receptor family member (str-92) [Caenorhabditis elegans] 1.0E-175
blast CAB04535 Hypothetical protein F59A1.3 [Caenorhabditis elegans] ref|NP_507473.1| Seven TM Receptor family member (str-92) [Caenorhabditis elegans] 1.0E-149
blast CAD90179 Hypothetical protein F59A1.14 [Caenorhabditis elegans] ref|NP_001023998.1| Seven TM Receptor family member (str-93) [Caenorhabditis elegans] 1.0E-124
blast CAD90179 Hypothetical protein F59A1.14 [Caenorhabditis elegans] ref|NP_001023998.1| Seven TM Receptor family member (str-93) [Caenorhabditis elegans] 1.0E-109
blast CAE61724 Hypothetical protein CBG05674 [Caenorhabditis briggsae] 1.0E-104
blast CAE61724 Hypothetical protein CBG05674 [Caenorhabditis briggsae] 6.0E-91
blast CAB04535 Hypothetical protein F59A1.3 [Caenorhabditis elegans] ref|NP_507473.1| Seven TM Receptor family member (str-92) [Caenorhabditis elegans] 5.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 9.0E-12
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 5.7E-13
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.3E-17
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 5.7E-13
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 5.7E-13
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 6.0E-12
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.3E-17
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.7E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507473.1 7 4-26,38-57,89-111,124-146,201-223,251-273,288-310
F59A1.3 7 4-26,38-57,89-111,124-146,201-223,251-273,288-310
SNAP00000002320 3 36-58,86-108,123-145
GENEFINDER00000002326 11 4-26,38-57,89-111,124-146,240-262,290-312,327-349,408-430,486-508,535-557,572-594
Sequence
Target Sequence 
>C. ELEGANS:179657_AT
caacttcaacctatctcgtttggatttcacctacgcttcatctctattttatagaactga
cccagacacaggaaaggactttgcaagttttccggattttttgttcctgataaatcattg
caccactattataatcggcttctccattatcatatattgttggctcaaactccgcaatga
gcttctccactctgacgatcaaactcaaaatctatcacaaagaaccttggatatgcaacg
ccaactcttccgatctctagtcgcccaaacactattcccagtgttcctaatgttcatccc
ggccggaattctactatgtttcccgattttgagaattgatatgggaccaattgaaactat
tatcatacccctcatcactactcaaccatttatggatgccttagtgcctatgtattac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACTTCAACCTATCTCGTTTGGAT 244 189 516 Antisense
TCGTTTGGATTTCACCTACGCTTCA 472 603 531 Antisense
GCACCACTATTATAATCGGCTTCTC 50 315 635 Antisense
TCGGCTTCTCCATTATCATATATTG 568 607 650 Antisense
TCAAACTCCGCAATGAGCTTCTCCA 605 629 680 Antisense
TTCTCCACTCTGACGATCAAACTCA 593 693 698 Antisense
TTCCCAGTGTTCCTAATGTTCATCC 694 697 790 Antisense
TTCATCCCGGCCGGAATTCTACTAT 481 685 808 Antisense
TGAAACTATTATCATACCCCTCATC 341 573 867 Antisense
CCTCATCACTACTCAACCATTTATG 439 267 885 Antisense
GGATGCCTTAGTGCCTATGTATTAC 423 513 909 Antisense
Sequence Source Affymetrix Proprietary Database