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[179656_at]

Description F11E6.6 /REP_DB=WormBase Gene ID /WP=CE19786 /TR=Q9U3J7 /GB=CAB62801.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 01      4grp_high_8_8 > 49      6grp_highest_nonorm > 80      6grp_total > 14      4grp_total > 54      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 403
1 2 3 4 range
A 424.4
(3)
P 		285.5
(0.3)
P 		319.4
(1)
P 		116.6
(-3)
P 		308
B 519.6
(3)
P 		272.9
(-0.9)
P 		262.9
(-1)
P 		135.5
(-3)
A 		384
C 440.8
(3)
P 		310.3
(0.5)
P 		239.5
(-0.8)
P 		126.7
(-3)
A 		314
avr 461.6
(3) 		289.6
(-0.1) 		273.9
(-0.4) 		126.3
(-3) 		335

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 356
1 2 3 4 5 6 range
A 379
(3)
P 		231.5
(-0.4)
P 		245.6
(-0)
P 		238.3
(-0.2)
P 		119.4
(-2.9)
P 		116.5
(-3)
P 		263
B 449.8
(3)
P 		318
(0.7)
P 		194.4
(-1.5)
P 		248.6
(-0.6)
P 		170.7
(-2)
P 		112.2
(-3)
P 		338
C 358.4
(3)
P 		283.4
(1.3)
P 		283.9
(1.3)
P 		212.7
(-0.3)
P 		160.8
(-1.5)
P 		93.4
(-3)
P 		265
avr 395.7
(3) 		277.6
(0.5) 		241.3
(-0.2) 		233.2
(-0.4) 		150.3
(-2.1) 		107.4
(-3) 		288
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 149
1 2 3 4 range
A 154.5
(3)
P 		62
(-1)
P 		83.5
(-0.1)
P 		17.1
(-3)
P 		137
B 165.7
(3)
P 		67.4
(-1.3)
P 		60.9
(-1.6)
P 		28.9
(-3)
A 		137
C 145.9
(3)
P 		89.2
(0.3)
P 		83.5
(-0)
P 		21.4
(-3)
A 		125
avr 155.4
(3) 		72.9
(-0.7) 		76
(-0.6) 		22.5
(-3) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 69.9
(1.6)
P 		82.3
(3)
P 		53.5
(-0.2)
P 		60.4
(0.6)
P 		36
(-2.2)
P 		28.4
(-3)
P 		54
B 156.5
(3)
P 		105.8
(0.3)
P 		47.2
(-2.7)
P 		65.9
(-1.7)
P 		69.4
(-1.6)
P 		41.8
(-3)
P 		115
C 132.8
(3)
P 		86.5
(0.3)
P 		72.3
(-0.6)
P 		42.8
(-2.3)
P 		52
(-1.8)
P 		31.3
(-3)
P 		102
avr 119.7
(3) 		91.5
(1) 		57.7
(-1.3) 		56.4
(-1.4) 		52.5
(-1.7) 		33.8
(-3) 		86
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179656_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9114
Sequence Type Exemplar sequence
Representative Public ID F11E6.6 NCBI
Target Description F11E6.6 /REP_DB=WormBase Gene ID /WP=CE19786 /TR=Q9U3J7 /GB=CAB62801.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070712(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070712 NCBI Caenorhabditis elegans F11E6.6 (F11E6.6) mRNA, complete cds. 11/11 None
SNAP00000042533 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17464510:17465587:-1 9/11 None
GENEFINDER00000042544 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17464510:17465882:-1 11/11 None
F11E6.6 ENSEMBL cdna:known chromosome:CEL140:IV:17464510:17465882:-1 gene:F11E6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17464515-17465888(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F11E6.6
Entrez Gene 184359 Entrez gene
SwissProt Q9U3J7 EMBL-EBI
WormBase CE35464 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB62801 Hypothetical protein F11E6.6 [Caenorhabditis elegans] ref|NP_503113.2| F11E6.6 [Caenorhabditis elegans] 1.0E-135
blast CAE57473 Hypothetical protein CBG00439 [Caenorhabditis briggsae] 1.0E-121
blast CAB62801 Hypothetical protein F11E6.6 [Caenorhabditis elegans] ref|NP_503113.2| F11E6.6 [Caenorhabditis elegans] 6.0E-78
blast CAE57473 Hypothetical protein CBG00439 [Caenorhabditis briggsae] 1.0E-67
blast CAA21131 EG:22E5.9 [Drosophila melanogaster] gb|AAF45721.1| CG4025-PA [Drosophila melanogaster] gb|AAM49982.1| LP10820p [Drosophila melanogaster] ref|NP_569979.1| CG4025-PA [Drosophila melanogaster] 1.0E-12
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503113.2 6 7-29,49-71,92-114,129-151,158-180,195-217
F11E6.6 6 7-29,49-71,92-114,129-151,158-180,195-217
SNAP00000042533 3 28-50,65-87,100-122
GENEFINDER00000042544 6 7-29,49-71,92-114,129-151,158-180,195-217
Sequence
Target Sequence 
>C. ELEGANS:179656_AT
tgctgatcgcttacatacggcatcgccaaactgttgaatattacgctcatcggcttggat
gggagaactccgtctggcgtctgatgtccacaataatagcgggaatcgggttttttgcag
ctctttgtattaccgtaatcgcacattgtgaggatcctcaacttgcaattgtgcatgact
tggcggacactatagctttcagtgcagggttactttatgcgtggtctcaagcagtactta
cttgggctctagttccacgtatgtgcactctcaaagtttgcatatttcggttcacaatag
cgctaatagaaaccgtggccttcatattttatcgctttgtaaaagatgatgtgaatcttt
cccctccgtggcttctagaagcaagtctatgggttattgcaatatgcttccacgttttca
tcatcacgtttttcatcgagcttcggttctcatatcttcactctccgaaggtcgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTGATCGCTTACATACGGCATCG 702 579 257 Antisense
GGATGGGAGAACTCCGTCTGGCGTC 657 513 313 Antisense
GTCTGGCGTCTGATGTCCACAATAA 33 473 328 Antisense
AATCGGGTTTTTTGCAGCTCTTTGT 490 169 360 Antisense
GTACTTACTTGGGCTCTAGTTCCAC 98 459 490 Antisense
CTAGTTCCACGTATGTGCACTCTCA 513 223 505 Antisense
GAAACCGTGGCCTTCATATTTTATC 389 357 565 Antisense
ATTGCAATATGCTTCCACGTTTTCA 134 7 652 Antisense
TCATCACGTTTTTCATCGAGCTTCG 459 619 677 Antisense
TCGAGCTTCGGTTCTCATATCTTCA 523 601 692 Antisense
ATATCTTCACTCTCCGAAGGTCGTT 311 19 708 Antisense
Sequence Source Affymetrix Proprietary Database