[Home] | [Total List]

[179655_at]

Description F15D4.7 /REP_DB=WormBase Gene ID /WP=CE23659 /TR=Q93515 /GB=CAB60425.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 48      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 21.6
(-3)
A 		38.2
(-1.3)
A 		79
(3)
A 		50
(-0)
A 		57
B 7.4
(-3)
A 		36.4
(3)
A 		25.3
(0.7)
A 		14.2
(-1.6)
A 		29
C 59.4
(3)
A 		29.5
(-1.8)
A 		36.2
(-0.8)
A 		22.3
(-3)
A 		37
avr 29.5
(-2.8) 		34.7
(-1) 		46.8
(3) 		28.8
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 26
(-2)
A 		22.9
(-2.5)
A 		55.6
(3)
A 		38.7
(0.2)
A 		19.9
(-3)
A 		35.7
(-0.3)
A 		36
B 23.4
(-0.2)
A 		33.2
(1.2)
A 		46.1
(3)
A 		10.9
(-2)
A 		3.5
(-3)
A 		14.6
(-1.4)
A 		43
C 32.2
(-2.3)
A 		33.6
(-2)
A 		44.5
(0.5)
A 		29
(-3)
A 		55.7
(3)
A 		32.9
(-2.1)
A 		27
avr 27.2
(-2.7) 		29.9
(-2) 		48.7
(3) 		26.2
(-3) 		26.4
(-2.9) 		27.7
(-2.6) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 7.8
(-2.8)
A 		8.3
(-2.5)
A 		20.6
(3)
A 		7.3
(-3)
A 		13
B 2.4
(-3)
A 		9
(3)
A 		5.9
(0.2)
A 		3
(-2.5)
A 		7
C 19.7
(3)
A 		8.5
(-1.2)
A 		12.6
(0.3)
A 		3.8
(-3)
A 		16
avr 10
(0.8) 		8.6
(-0.2) 		13
(3) 		4.7
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 4.8
(-3)
A 		8.1
(-0.3)
A 		12.1
(3)
A 		9.8
(1.1)
A 		6
(-2)
A 		8.7
(0.2)
A 		7
B 8.2
(1.2)
A 		11
(2.9)
A 		11.2
(3)
A 		2.9
(-2.1)
A 		1.4
(-3)
A 		5.4
(-0.6)
A 		10
C 11.9
(0)
A 		10.3
(-0.8)
A 		11.3
(-0.3)
A 		5.8
(-3)
A 		18
(3)
A 		11
(-0.4)
A 		12
avr 8.3
(-0.6) 		9.8
(1.1) 		11.5
(3) 		6.2
(-3) 		8.5
(-0.4) 		8.4
(-0.5) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179655_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3743
Sequence Type Exemplar sequence
Representative Public ID F15D4.7 NCBI
Target Description F15D4.7 /REP_DB=WormBase Gene ID /WP=CE23659 /TR=Q93515 /GB=CAB60425.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064407(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064407 NCBI Caenorhabditis elegans F15D4.7 (F15D4.7) mRNA, complete cds. 11/11 None
SNAP00000006607 ENSEMBL cdna:SNAP chromosome:CEL140:II:13255481:13259139:1 10/11 None
F15D4.7 ENSEMBL cdna:known chromosome:CEL140:II:13251957:13259547:1 gene:F15D4.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000006672 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13251953-13259544(+) 51.7 100.0
Public Domain and Genome References
Gene Title
Ensembl F15D4.7
Entrez Gene 184532 Entrez gene
SwissProt Q93515 EMBL-EBI
WormBase CE23659 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6310 DNA recombination inferred from electronic annotation QuickGO AmiGO
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
4190 aspartic-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02490 Hypothetical protein F15D4.7 [Caenorhabditis elegans] emb|CAB60425.1| Hypothetical protein F15D4.7 [Caenorhabditis elegans] ref|NP_496808.1| F15D4.7 [Caenorhabditis elegans] 0.0
blast T31583 hypothetical protein Y48C3A.a - Caenorhabditis elegans 0.0
blast CAB03949 Hypothetical protein C38D9.3 [Caenorhabditis elegans] ref|NP_507451.1| C38D9.3 [Caenorhabditis elegans] 0.0
blast T26836 hypothetical protein Y43F4A.2 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 1.3E-17
Pfam IPR008042 EMBL-EBI Retrotransposon, Pao 1.4E-95
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 1.3E-17
Pfam IPR008042 EMBL-EBI Retrotransposon, Pao 1.4E-95
Sequence
Target Sequence 
>C. ELEGANS:179655_AT
gagggactaccatcaagcggactatttgtcagcttatcccactcgaagttgaagaacacc
acctggaccacgacaacgacctacacccacccacgccatcgattgaagaagaagacgacc
cggacgacaagtcctctcctcttccattaccaccttcacccgctcatattcagcaacttc
cgagcaatctcgctccgaaactttcacaaactaaagctcaagaagccaaaaactctaacg
acaccaatatccaaaatttgtctagagatataaatgtaccaagagataccaacaaacatc
agactgaagtcgaggattgttacgcagaatacaaagatccagtagtaccagaaccaatgg
actttggaaaaatccaacttccagagcgccgaactcgcgaatacctctcgaggaaagcaa
aattggctgaaaagaactacgtacattatttatctaatgaatgttcacacagaagtcatg
acgtagttgtcaaccaattccgatgctttactggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGGACTACCATCAAGCGGACTAT 537 395 6221 Antisense
AGCGGACTATTTGTCAGCTTATCCC 682 81 6236 Antisense
TCAGCTTATCCCACTCGAAGTTGAA 643 623 6249 Antisense
TTGAAGAACACCACCTGGACCACGA 43 701 6269 Antisense
CCACCCACGCCATCGATTGAAGAAG 504 273 6307 Antisense
GAAGACGACCCGGACGACAAGTCCT 501 337 6331 Antisense
ATATTCAGCAACTTCCGAGCAATCT 309 19 6386 Antisense
GAGCAATCTCGCTCCGAAACTTTCA 267 391 6402 Antisense
GGAAAAATCCAACTTCCAGAGCGCC 82 529 6586 Antisense
CCGAACTCGCGAATACCTCTCGAGG 163 263 6609 Antisense
CAACCAATTCCGATGCTTTACTGGG 403 185 6711 Antisense
Sequence Source Affymetrix Proprietary Database