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[179654_at]

Description T08G3.6 /REP_DB=WormBase Gene ID /WP=CE18938 /TR=Q9XU51 /GB=CAB05796.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 13      4grp_total > 57      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 24.5
(-3)
A 		64.6
(3)
A 		59.3
(2.2)
A 		31.3
(-2)
A 		40
B 19.4
(-0.9)
A 		32.9
(2.8)
A 		33.5
(3)
A 		11.8
(-3)
A 		22
C 37
(3)
A 		15.4
(-3)
A 		22.8
(-0.9)
A 		26.9
(0.2)
A 		22
avr 27
(-1.5) 		37.6
(2.6) 		38.5
(3) 		23.3
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 18.3
(-1.3)
A 		48.2
(3)
A 		21.5
(-0.9)
A 		31.3
(0.6)
A 		12.7
(-2.1)
A 		6.7
(-3)
A 		42
B 30.2
(3)
A 		8.1
(-2.5)
A 		8.6
(-2.4)
A 		6.1
(-3)
A 		6.1
(-3)
A 		13.9
(-1.1)
A 		24
C 22.6
(0.3)
A 		11.8
(-1.9)
A 		14.3
(-1.4)
A 		36.2
(3)
A 		8.2
(-2.6)
A 		6.4
(-3)
A 		30
avr 23.7
(2.7) 		22.7
(2.3) 		14.8
(-0.8) 		24.5
(3) 		9
(-3) 		9
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 8.9
(-0.6)
A 		14
(2.2)
A 		15.5
(3)
A 		4.6
(-3)
A 		11
B 6.2
(1)
A 		8.1
(3)
A 		7.8
(2.7)
A 		2.5
(-3)
A 		6
C 12.3
(3)
A 		4.4
(-3)
A 		8
(-0.3)
A 		4.5
(-2.9)
A 		8
avr 9.1
(1.8) 		8.8
(1.5) 		10.4
(3) 		3.9
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 3.4
(-2.3)
A 		17.1
(3)
A 		4.7
(-1.8)
A 		7.9
(-0.6)
A 		3.8
(-2.1)
A 		1.6
(-3)
A 		16
B 10.5
(3)
A 		2.7
(-2.3)
A 		2.1
(-2.7)
A 		1.6
(-3)
A 		2.5
(-2.4)
A 		5.2
(-0.6)
A 		9
C 8.4
(3)
A 		3.6
(-1.6)
A 		3.6
(-1.6)
A 		7.3
(1.9)
A 		2.6
(-2.6)
A 		2.2
(-3)
A 		6
avr 7.4
(2.5) 		7.8
(3) 		3.5
(-2.4) 		5.6
(0.3) 		3
(-3) 		3
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179654_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13072
Sequence Type Exemplar sequence
Representative Public ID T08G3.6 NCBI
Target Description T08G3.6 /REP_DB=WormBase Gene ID /WP=CE18938 /TR=Q9XU51 /GB=CAB05796.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074759(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074759 NCBI Caenorhabditis elegans T08G3.6 (T08G3.6) mRNA, complete cds. 11/11 None
SNAP00000031130 ENSEMBL cdna:SNAP chromosome:CEL140:V:16448679:16450293:1 11/11 None
GENEFINDER00000031147 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16448691:16451927:1 11/11 None
T08G3.6 ENSEMBL cdna:known chromosome:CEL140:V:16448559:16449748:1 gene:T08G3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16448558-16449748(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T08G3.6
Entrez Gene 188297 Entrez gene
SwissProt Q9XU51 EMBL-EBI
WormBase CE18938 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05796 Hypothetical protein T08G3.6 [Caenorhabditis elegans] ref|NP_507160.1| T08G3.6 [Caenorhabditis elegans] 0.0
blast CAB05796 Hypothetical protein T08G3.6 [Caenorhabditis elegans] ref|NP_507160.1| T08G3.6 [Caenorhabditis elegans] 1.0E-159
blast CAB05796 Hypothetical protein T08G3.6 [Caenorhabditis elegans] ref|NP_507160.1| T08G3.6 [Caenorhabditis elegans] 1.0E-158
blast CAE17930 Hypothetical protein T08G3.13 [Caenorhabditis elegans] ref|NP_001024123.1| T08G3.13 [Caenorhabditis elegans] 2.0E-74
blast AAY44006 Hypothetical protein F58F9.8 [Caenorhabditis elegans] ref|NP_001023243.1| F58F9.8 [Caenorhabditis elegans] 1.0E-68
blast AAY44006 Hypothetical protein F58F9.8 [Caenorhabditis elegans] ref|NP_001023243.1| F58F9.8 [Caenorhabditis elegans] 2.0E-68
blast AAY44006 Hypothetical protein F58F9.8 [Caenorhabditis elegans] ref|NP_001023243.1| F58F9.8 [Caenorhabditis elegans] 7.0E-68
blast AAY44007 Hypothetical protein F58F9.9 [Caenorhabditis elegans] ref|NP_001023244.1| F58F9.9 [Caenorhabditis elegans] 3.0E-66
Protein Domains
Database ID Description E-Value
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 4.4E-17
Sequence
Target Sequence 
>C. ELEGANS:179654_AT
ctcaaaaacttgtgtctaccctgctcaacgaacgtgctgcattccatatgtcccaatgat
tatcaacggatcacaacagtgcggaccatttcctaaggatccagacagatccagtgaatc
accttgttgtccaaaaggaggattttggtcgacatggagtgcgtattttagagatggcga
aaagaaagcatggtcgagaactcggcgttgcctgaccgaagaagccgggtgcccctgcac
tgatccgggcaccaccatcgaaacgtcgacagcatgtccttgtcggaaattggtcgatgt
ttccagtttagtgaagaccaatctgggaacttacacattgaatccagtgtacaacgatga
ggattgtactgcttctcaagtcatggaaagtcaaaaaagtgctgtgggtgagccgtgcaa
tgaatacacctcgtggaagtattaccgatggaccaatgcggtgcgatacgtaaaaccagg
aagatctgattacgttggaattaaaatttccaattgtgaagccgcccacgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCAAAAACTTGTGTCTACCCTGCT 266 227 300 Antisense
CCTGCTCAACGAACGTGCTGCATTC 281 267 319 Antisense
TGCTGCATTCCATATGTCCCAATGA 262 583 334 Antisense
GTGCGGACCATTTCCTAAGGATCCA 655 477 378 Antisense
CCAGTGAATCACCTTGTTGTCCAAA 561 271 410 Antisense
GCATGGTCGAGAACTCGGCGTTGCC 106 311 487 Antisense
GGCGTTGCCTGACCGAAGAAGCCGG 428 541 503 Antisense
GAAACGTCGACAGCATGTCCTTGTC 499 357 559 Antisense
GGATTGTACTGCTTCTCAAGTCATG 595 507 660 Antisense
GTGCTGTGGGTGAGCCGTGCAATGA 20 479 698 Antisense
TCCAATTGTGAAGCCGCCCACGAAA 284 585 808 Antisense
Sequence Source Affymetrix Proprietary Database