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[179653_at]

Description ZK930.4 /REP_DB=WormBase Gene ID /WP=CE06674 /TR=Q23666 /GB=CAA94172.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 28      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 52.1
(0.6)
A 		30.6
(-3)
A 		43.9
(-0.8)
A 		66.1
(3)
A 		36
B 45
(2)
A 		52.5
(3)
A 		7.3
(-3)
A 		47.6
(2.3)
A 		45
C 35.8
(-0.7)
A 		49
(1.9)
A 		24.4
(-3)
A 		54.5
(3)
A 		30
avr 44.3
(0.7) 		44
(0.7) 		25.2
(-3) 		56.1
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 60.5
(-0.4)
A 		6.2
(-3)
A 		21.8
(-2.2)
A 		36.4
(-1.5)
A 		77.4
(0.4)
A 		130.3
(3)
P 		124
B 33.3
(-1.7)
A 		41.1
(-1.3)
A 		8.6
(-3)
A 		31.9
(-1.8)
A 		95
(1.5)
A 		123.7
(3)
P 		115
C 13
(-3)
A 		41.2
(-1.4)
A 		33
(-1.9)
A 		73.7
(0.4)
A 		91.8
(1.4)
A 		121.1
(3)
P 		108
avr 35.6
(-2.2) 		29.5
(-2.5) 		21.1
(-3) 		47.3
(-1.5) 		88.1
(0.9) 		125
(3) 		104
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 19
(3)
A 		6.6
(-3)
A 		11.5
(-0.6)
A 		9.7
(-1.5)
A 		12
B 14.3
(3)
A 		13
(2.4)
A 		1.7
(-3)
A 		10.2
(1)
A 		13
C 11.8
(0.5)
A 		14.1
(3)
A 		8.5
(-3)
A 		9.2
(-2.3)
A 		6
avr 15
(3) 		11.2
(0.1) 		7.2
(-3) 		9.7
(-1.1) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 11.1
(-1.2)
A 		2.2
(-3)
A 		4.7
(-2.5)
A 		9.2
(-1.6)
A 		23.4
(1.3)
A 		31.7
(3)
P 		30
B 11.6
(-1.7)
A 		13.7
(-1.4)
A 		2.1
(-3)
A 		8.5
(-2.1)
A 		38.6
(2)
A 		46.1
(3)
P 		44
C 4.8
(-3)
A 		12.6
(-1.7)
A 		8.4
(-2.4)
A 		14.8
(-1.3)
A 		29.7
(1.2)
A 		40.5
(3)
P 		36
avr 9.2
(-2.3) 		9.5
(-2.2) 		5.1
(-3) 		10.8
(-2) 		30.6
(1.5) 		39.4
(3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179653_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2836
Sequence Type Exemplar sequence
Representative Public ID ZK930.4 NCBI
Target Description ZK930.4 /REP_DB=WormBase Gene ID /WP=CE06674 /TR=Q23666 /GB=CAA94172.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064140(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064140 NCBI Caenorhabditis elegans ZK930.4 (ZK930.4) mRNA, complete cds. 11/11 None
SNAP00000000324 ENSEMBL cdna:SNAP chromosome:CEL140:II:11907686:11908475:1 10/11 None
GENEFINDER00000000329 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11907773:11908475:1 10/11 None
ZK930.4 ENSEMBL cdna:known chromosome:CEL140:II:11907686:11908475:1 gene:ZK930.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11907682-11908472(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK930.4
Entrez Gene 191464 Entrez gene
SwissProt Q23666 EMBL-EBI
WormBase CE06674 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94172 Hypothetical protein ZK930.4 [Caenorhabditis elegans] ref|NP_496541.1| ZK930.4 [Caenorhabditis elegans] 6.0E-88
blast CAA94172 Hypothetical protein ZK930.4 [Caenorhabditis elegans] ref|NP_496541.1| ZK930.4 [Caenorhabditis elegans] 6.0E-76
blast CAA94172 Hypothetical protein ZK930.4 [Caenorhabditis elegans] ref|NP_496541.1| ZK930.4 [Caenorhabditis elegans] 5.0E-71
blast CAE59529 Hypothetical protein CBG02924 [Caenorhabditis briggsae] 7.0E-21
blast CAE59529 Hypothetical protein CBG02924 [Caenorhabditis briggsae] 1.0E-18
blast CAA94176 Hypothetical protein ZK930.7 [Caenorhabditis elegans] ref|NP_496543.1| ZK930.7 [Caenorhabditis elegans] 3.0E-17
blast CAA94176 Hypothetical protein ZK930.7 [Caenorhabditis elegans] ref|NP_496543.1| ZK930.7 [Caenorhabditis elegans] 2.0E-15
Sequence
Target Sequence 
>C. ELEGANS:179653_AT
cagtgtgctccagaatttccagcctatattttttttcagtatacttgcaagatttggccg
atatggaagatcgaacttcgacttctcgctgtagttcaacgactcggatcaagcccacca
agatcgccggattcggaacggttccactgcttagctcggccgggacgaatcaatcagttc
tgtcgacgaaatctgcaaagtcttgcttgtctaataccatcgcagcatccatgactgaac
cacaagtatccatgactcaagtggatcggatgtacgaggataatctggcgcgtaagaaga
gatcaatggtggccgtgtccgagttcaacaagatatatggacaggaatatcatccaccat
catcttccgaatcgactcgatctttctatgagaacattgatgccgtctatccatcttcaa
aagcatcggagtcttcatcctcgtcggcatcaactggatcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGTGTGCTCCAGAATTTCCAGCCT 461 207 38 Antisense
GAAGATCGAACTTCGACTTCTCGCT 282 337 103 Antisense
GACTTCTCGCTGTAGTTCAACGACT 662 371 117 Antisense
GATCGCCGGATTCGGAACGGTTCCA 329 415 159 Antisense
TTAGCTCGGCCGGGACGAATCAATC 650 555 188 Antisense
AAGTCTTGCTTGTCTAATACCATCG 684 157 235 Antisense
ATACCATCGCAGCATCCATGACTGA 465 19 251 Antisense
AGAGATCAATGGTGGCCGTGTCCGA 95 65 335 Antisense
ATCATCTTCCGAATCGACTCGATCT 204 31 396 Antisense
ATTGATGCCGTCTATCCATCTTCAA 343 5 433 Antisense
TCCTCGTCGGCATCAACTGGATCAT 75 593 475 Antisense
Sequence Source Affymetrix Proprietary Database